Novacetimonas hansenii: IFJ82_07910
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Entry
IFJ82_07910 CDS
T06979
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kha
Novacetimonas hansenii
Pathway
kha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IFJ82_07910 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kha03400
]
IFJ82_07910 (mfd)
Enzymes [BR:
kha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IFJ82_07910 (mfd)
DNA repair and recombination proteins [BR:
kha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IFJ82_07910 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_16
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QOF93924
LinkDB
All DBs
Position
complement(1779536..1783009)
Genome browser
AA seq
1157 aa
AA seq
DB search
MNEIRAARQTSGLTHIWGVPEGYDAFLLARRLSEHDGPLLHVARDDAEMARIGEQLAFIA
PDAEILRFPAWDCLPYDRVSPNPAIVAERVATLTCLLEKPTRPRIVLTTVNGLIQRVAPR
RAFAGQSLNIATGEALDQEFLIELLVANGYNRTDTVMEPGEFATRGGIFDIFPAGEAEPV
RLDLFGDEVENIRGFDPATQRSTTQKNALVMRPVADFSLDPDSISRFRTGWRDLFGPAAA
EDPMYQHVSDGRRHAGMEHWLALFHEHMETLVDYLPGVSISLAQQAEEAFAARLEMITDH
FEARRQPPREGEVPYRALPSHLMYLDRKGWDAMLSGHPAMVFMPFAQPDGAPGIDAGGRP
GQMFARTATDGMRENVFPMLAARMNEWAQTGRRTFVTAWSRGSAERLGVLLREYHLPVQS
FATWRDASRMKAGTVGLLTLGLEHGFVAEDMAFVSEQDLLGERISRPPRRRKKADQFIAE
ASEIAEGDLVVHQDYGIGRYDGLETIGVGSAPHDCLRLIYDGNEKLFLPVENIELLSRFG
SEQTGVALDKLGGVSWQSRKAKMKQRIRDMAGELIRTAAARALREAPALTPAEGLWDEFC
ARFPFVETEDQSRAIADVLDDMASGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGGQVAV
VVPTTLLARQHYRTFAARFADLPIKVAQLSRMVTGKDATAVRKGLEDGTVNIVIGTHALL
AKTVKFADLGLLIVDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREMS
LIATPPTDRLAVRTFIMPFDSVVIREAIQRERFRGGQVFCVVPRIEDLDRMATRLHEIVP
DARMVQAHGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLG
QLYQLRGRVGRGKQRGYAYLTWPQTHILSAAAQKRLEVMQTLDTLGAGFTLASHDLDLRG
AGNLLGDEQSGHIREVGIELYQQMLEDAVADLRHEKGRRKTEDRDWTPNIILGLPVLIPD
TYVPDLPVRLGLYRRISALANDAEIEAMQAELIDRFGTLPDEVRNLLDVVALKRMCRMAG
VERLEAGPKGMVIQFRNNSFVNPAGLVTWIAQQKDAKVRLRPDHKLAVIREMTNVQRIAQ
ARRVLGALNALADAAPA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagatccgcgccgcgcgacagacatccggcctgacccatatctggggcgtgccg
gaagggtatgacgcgtttctcctcgcccgtcgcctgtccgaacatgatggccccctgctg
catgtggcgcgcgatgacgcggaaatggcgcggattggcgaacagcttgcctttattgca
cccgatgcggaaatcctgcgttttccggcatgggactgcttgccttatgaccgggtttcc
cccaatcccgccatcgttgccgaacgtgtcgcgaccctgacctgcctgctggaaaaaccg
acacgcccacgcatcgtgctgacgacggtcaatggcctgatccagcgcgtcgccccacgc
cgcgcattcgcggggcaatcgctcaacatcgcaacgggcgaggcactggaccaggaattc
ctgatcgaacttctggtcgcaaacggctacaatcgtactgatacggtgatggaaccgggt
gaatttgcgacacgcggcgggatttttgatattttcccggccggtgaggccgaacccgta
cgccttgacctgttcggggacgaggtggaaaatattcgcggctttgaccccgcgacccaa
cgctccacaacacaaaaaaacgcgctggtcatgaggcccgtggcggatttcagcctcgat
cccgacagcatctcgcgctttcgcaccggctggcgcgatctgtttggccctgcggcagcc
gaagacccgatgtaccagcatgtctctgacgggcggcggcatgcaggcatggaacactgg
ttggcgctgttccatgaacatatggaaacccttgtcgactatctgcccggggtgtcgatt
tcactggcgcagcaggcggaagaggcctttgccgcgcgtctggaaatgatcaccgatcat
ttcgaagcccgccgccagcccccccgcgaaggggaagtgccttaccgcgcacttccgtcc
cacctgatgtatcttgaccgcaagggatgggacgccatgctgtcgggacacccggcaatg
gtattcatgccctttgcacagcccgatggtgcgccaggcattgatgcaggtggcaggccg
ggacagatgttcgcgcggaccgcaaccgacggcatgcgcgaaaatgtctttccgatgctg
gctgcgcgcatgaatgaatgggcacagacgggacggcgcacctttgtcaccgcctggagc
cgtggctctgccgaacggctgggtgtacttttgcgcgaatatcatctgccggtgcagtca
ttcgcgacatggcgcgacgcgtcacgcatgaaggccggcacggttggattgctgacactg
gggctggaacacggtttcgtggccgaagacatggcgttcgtgtccgagcaggaccttctg
ggcgaacggatttcgcgcccaccgcgccgccgcaagaaagccgaccagttcattgccgaa
gcgtctgaaatcgcggaaggcgaccttgtcgtgcatcaggattacggcatcggccgctat
gacgggctggagacgattggcgtgggcagtgcgccgcatgactgtctgcgcctgatctac
gacggaaatgaaaagctgttcctgccggtcgagaatatcgaactgctcagccgttttggc
tcggaacagacgggggttgcgctcgacaagcttggcggtgtgtcgtggcagtcgcgcaag
gcaaagatgaagcagcgcatccgcgacatggcgggtgaactgatccgtacggccgcggca
cgcgccctgcgcgaagccccggcgctgaccccggccgaagggctgtgggacgaattctgc
gcccgcttcccctttgtggagaccgaggatcagtcccgcgccattgccgacgtgcttgat
gacatggcgtcgggccgcccgatggaccggctggtatgtggcgatgtcgggtttggcaag
acggaagtggcattgcgcgcggcctttgtcgccgcgatgtcgggcgggcaggtcgcggtt
gtcgtgcccaccacattgctggcgcgacagcattaccgcacgttcgccgcccgttttgcc
gacctgccgatcaaggtggcgcaactgtcgcgcatggtcacgggcaaggacgccaccgca
gtgcgcaaggggctggaggatggcacggtcaatattgtcatcggcacgcatgcgctgctg
gccaagacggtgaaatttgcggatcttggcctgctgatcgtggatgaagaacagcatttc
ggcgttgcgcacaaggaaaagctcaaggccctgcgtgaagatgtccatgtcctgacgctc
tcggccaccccgctgccgcgcaccttacaacttgcgttgaccggtgtgcgggaaatgagc
ctgatcgctaccccaccaaccgaccgcctggcggtgcgcaccttcatcatgccattcgac
agcgtcgtcattcgcgaggccatccagcgtgagcggttccgtggggggcaggtgttctgt
gtcgtaccccgtatcgaggatctggaccgcatggcaacacggttacatgaaatcgtgccc
gatgcgcggatggtacaggcacatggccgcctgaccccgaccgaactggaacgggtcatg
accgaattcagcgatggcaaatacgatatcctgctgtccaccaatatcgtcgaaagcggt
ctggacatgcctgcggtcaacacgctgatcatccatcgtgcggacatgttcgggctgggg
caactatatcaattgcgtgggcgcgtcggacgcggcaaacagcggggatatgcgtacctg
acatggccgcagacacacatcctgtccgctgccgcgcaaaagcggctggaggtcatgcag
acactcgacacgttgggggcgggctttacgctggcatcgcatgaccttgacctgcgcggc
gcgggaaacctgcttggcgatgagcagtcgggacatatccgcgaggtcgggatcgagctt
taccaacagatgctcgaagatgctgtggcggacctccgccatgaaaaaggccgtcgcaag
acagaggatcgcgactggacccccaacatcatcctgggcctgcccgtactgatacccgac
acctacgtgcccgacctgccagtacgtcttgggctgtatcgccggatctcggcccttgcc
aacgatgcggagatcgaggcgatgcaggcagagctgattgaccggttcggcaccctgccc
gatgaggtacgcaacctgcttgatgtcgtcgcactcaagcggatgtgccgcatggcaggt
gtggaacggctggaggccgggccgaaaggcatggtgatccagttccgcaataacagcttc
gtcaacccggcaggactggtcacatggatcgcacagcaaaaggacgcaaaagtgcgcctg
cgccctgatcacaagctggcggttatcagggaaatgacgaatgtgcagcgtatcgcacag
gcccgcagggtgcttggtgcgctgaatgcgctggcggatgccgccccggcctga
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