Roseateles sp. DAIF2: G8A07_18750
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Entry
G8A07_18750 CDS
T06904
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kia
Roseateles sp. DAIF2
Pathway
kia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G8A07_18750 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kia03400
]
G8A07_18750 (mfd)
Enzymes [BR:
kia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G8A07_18750 (mfd)
DNA repair and recombination proteins [BR:
kia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G8A07_18750 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
HemY_N
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QPF74758
UniProt:
A0A7S9C9V8
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All DBs
Position
4036557..4040024
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AA seq
1155 aa
AA seq
DB search
MQLPLIAPGKKFNQPRPPGSADALLLARYCRQQLAAGRLTAIVTAEPADTQRLEDELKFF
APELRVAVFPDWETLPYDTFSPHQDLISERLATLWRLLQGQGKPVAEREVDVVLLPASTA
LVRLAPASFLAATTFNFKQKQRLDEASLKSQLTLGGYTHVSQVVSPGEYAVRGGLIDLFP
MGSPVPYRVDLFGDEVDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDEAARQAFRARWRE
KMDGDPTRSRIYKDMAQGIATAGIEFYLPIFFEQTASIFDFVGADAALALHGEVDEALSR
FWTDTRERHRFLQHDPERPILPPEEIFLKVEEFFGLTHPHPVLALRGNEPVDYARPLPDV
SVERGAQEPLARLAAHLQSTPHRVLLLAESEGRRESLLELLRDNRIDPPSVKDLAEFEAD
TSEKFAITAAPLAAGFFWHEPEDGRAIQLFTETELFATTPTTRRRRKQEQVSDVNALIKD
LSELKVGDPVVHSNHGIGRYQGLINIDLGDGASEFLHLEYADKATLYVPVAQLHLISRYT
GVSAEEAPLHKLGSGQWEKAKRKAAEQVRDTAAELLNLYARRAAREGFAFRYSPHDYEAF
AASFGFEETPDQRAAIHAVIQDMISPKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVA
LLAPTTLLAEQHYQNIADRFGKWPVKVAEMSRFRSAKEIKVAMEGLADGSIDIVIGTHKL
ISGDVRFKRLGLMIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRDL
SVIATAPQRRLAIKTFVRTEMSGVIREAVLRELKRGGQVYFLHNEVETIENRKQKLEELL
PEARIVVAHGQMPERELERVMREFVGGKHNVLLCSTIIETGIDVPSANTIIISRADKFGL
AQLHQLRGRVGRSHHQAYAYLMVPDVEGLTKQAAQRLEAIQAMEELGSGFYLAMHDLEIR
GAGEVLGENQSGNMMEVGFQLYNDMLSQAVRDLKAGREPDLLSPLSATTEINLHAPALLP
DAYCGDVHQRLSLYKRLATAEKSEQIDAMLEEITDRFGKLPAQGQTLFDTHRLRVLAKPY
GVLKIDAAPTVMNINFRPNPPIDAMRVIELVQKNRNIKLVGNDKLRIDKALSDPKDRAQA
IREVLRLLGQPIKQD
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgcagctgcccctgatcgcccccggaaagaaattcaatcagccgcgcccgcccggctcg
gccgatgcgctgctgctggcccgctattgccgccagcagctggccgccggccggctgacc
gccatcgtcaccgccgagccggccgacacgcagcggctggaggacgagctgaagttcttc
gcgccggagctgcgcgtggccgtcttccccgattgggagaccctgccctacgacaccttc
agcccgcaccaggacctgatctccgagcgcctggccaccctgtggcgcctgctgcagggc
cagggcaagccggtggccgagcgcgaggtcgacgtggtgctgctgcccgccagcaccgcc
ctggtgcgcctggcgcccgccagcttcctggccgccaccaccttcaatttcaagcagaag
cagcgcctggacgaggcctcgctgaagagccagctgaccctgggcggctacacccatgtc
agccaggtcgtgtcgcccggcgaatacgcggtacgcggcggcctgatcgacctgttcccg
atgggctcgccggtgccctaccgcgtggacctgttcggcgacgaggtcgattcgatccgc
accttcgaccccgacagccagcgcagcctctacccggtgcccgaggtacggctgctgccg
ggccgcgagttcccgatggacgaggcggcgcgccaggccttccgcgcacgctggcgcgag
aagatggacggcgacccgacaagatcgcgcatttacaaggacatggcccagggcatcgcg
accgcgggcatcgagttctatctgccgatcttcttcgagcagaccgcgtcgatcttcgat
ttcgtcggcgctgacgccgcgctggccctgcatggcgaggtggatgaggcgctgagccgc
ttctggaccgatacgcgcgagcgccatcgcttcctgcagcatgaccctgagcggccgatc
ctgccgcccgaggagatcttcctgaaggtggaggagttcttcggcctgacgcatccgcac
ccggtcctggccttgcgcggcaacgagccggtggactatgcgcggccgttgcccgatgtc
tcggtcgagcgcggcgcgcaggaaccgctggcgcgcctggccgcgcatctgcagtcaacc
ccgcaccgcgtgctgctgctggccgagagcgagggccggcgcgagagcctgctggagctg
ctgcgcgacaacaggatcgacccgccctcggtcaaggacctggccgagttcgaggccgac
accagcgagaaattcgcgatcaccgccgcgccgcttgccgccggcttcttctggcatgaa
ccggaggatggccgggctatccagctgttcaccgagaccgaactctttgcgaccacgccg
accacgcgccggcggcgcaagcaggagcaggtcagcgacgtcaatgcgctgatcaaggac
ctgtccgagctgaaggtcggcgatccggtggtgcacagcaaccatggcatcggccgctac
cagggcctgatcaatatcgacctgggcgacggtgcttcggagttcctccacctggaatat
gccgacaaggccacgctctatgtgccggtggcccagctgcacctgatcagccgctacacc
ggcgtcagcgccgaggaagcgccgctgcacaagctgggttccggccagtgggagaaggcc
aagcgcaaggcggccgagcaggtgcgcgacaccgcggccgagttgctgaacctctacgcc
cgccgcgccgcgcgcgagggctttgccttccgctactcgccgcacgactacgaggccttc
gccgccagtttcggcttcgaggagacgcccgaccagcgcgccgcgatccatgcggtgatc
caggacatgatcagcccgaagccgatggaccgcctggtctgcggcgatgtgggcttcggc
aagaccgaggtggcgctgcgtgccgcctttgtcgcggtgatgggcggcaagcaggtcgcc
ctgctggcgccgaccaccctgctggccgagcagcattaccagaacatcgcggaccgcttc
ggcaaatggccggtcaaggtggccgagatgagccgcttccgctcggccaaggagatcaag
gtcgcgatggagggcctggccgacggctcgatcgacatcgtgatcggcacccacaagctg
atctcgggcgacgtcaggttcaagcgcctgggcctgatgatcatcgacgaggaacaccgc
ttcggcgtgcgccacaaggaggcgatgaaggcgatgcgcgccgaggtcgacgtgctgacc
ctgaccgccacgccgatcccgcgcaccctgggcatggcgctggaaggcctgcgcgacctc
agcgtgatcgccaccgcgccgcagcgccgcctggcgatcaagacctttgtgcgcaccgaa
atgagcggcgtgatccgcgaggcggtgctgcgcgagttgaaacgcggcggccaggtctac
ttcctgcacaacgaggtcgagactatcgagaaccgcaagcaaaagctcgaggagctgctg
ccggaggcgcgcatcgtcgtcgcccatggtcagatgcccgagcgcgagctggagcgggtg
atgcgcgagttcgtcggcggcaagcacaacgtcctgctgtgctcgaccatcatcgagacc
ggcatcgacgtgccgagcgccaacaccatcatcatcagccgcgccgacaagttcggcctg
gcccagctgcaccagctgcgcggccgcgtcggccgttcgcaccatcaggcttatgcctat
ctgatggtgcccgatgtggaggggctgaccaagcaggccgcccagcgcctggaagcgatc
caggccatggaggagctgggctcgggcttttacctcgccatgcacgacctggagatccgc
ggcgccggcgaggtgctgggcgagaaccagagcggcaacatgatggaggtgggcttccag
ctctacaacgacatgctgtcgcaggccgtgcgcgacctgaaggccggccgcgagccggac
ctgctcagccccctgtccgccaccaccgagatcaatctgcatgccccggccctgctgccc
gacgcctattgcggcgatgtgcaccagcgcctgtcgctctacaagcgcctggccacggcc
gagaagagcgagcagatcgacgcaatgctggaggagatcaccgaccgcttcggcaagctg
ccggcgcaggggcagaccctgttcgacacgcaccgcctgcgcgtgctggccaagccctat
ggcgtcttgaagatcgacgccgcgccgaccgtgatgaacatcaacttccgcccgaatccg
ccgatcgacgcgatgcgcgtgatcgagctggtgcagaagaaccgcaacatcaagctggtc
ggcaacgacaagctgcgcatcgacaaggcgctgtccgaccccaaggaccgcgcacaagcc
atccgcgaggtgctgcggctcctcggccaaccgatcaagcaggactga
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integrated database retrieval system
