Kluyvera intermedia: NCTC12125_01791
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Entry
NCTC12125_01791 CDS
T06042
Symbol
mfd_2
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kie
Kluyvera intermedia
Pathway
kie03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC12125_01791 (mfd_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kie03400
]
NCTC12125_01791 (mfd_2)
Enzymes [BR:
kie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC12125_01791 (mfd_2)
DNA repair and recombination proteins [BR:
kie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC12125_01791 (mfd_2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Helicase_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
VDZ83697
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All DBs
Position
1:1627551..1629122
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AA seq
523 aa
AA seq
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MCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSR
FRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKMRDLGLLIVDEEHRFGVRHKERIKAM
RADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILRE
TLRGGQVYYLFNDVENIQKTADKLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL
VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHTKAMTTD
AQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSGQMESIGFSLYMEMLENAVDA
LKEGREPSLEDLTSQQTEVELRMPSLLPDDYIPDVNTRLSFYKRIASAKGEHELDEIKVE
LIDRFGLLPDAARNLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPSWLIGLLQ
KQPQHYRLDGPTRLRFFQELAERKTRMDWVRQFMQQLEENALA
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
gtgtgtggtgatgtgggatttgggaaaaccgaagtggcgatgcgggcggccttcctcgcc
gtcgaaaaccacaagcaagtcgcggtactggtgccgaccaccctgctcgctcagcagcac
tacgataacttccgcgaccgctttgccaactggccggtgcgcattgaaatgctgtcacgt
tttcgtagcgccaaagagcaaacgcagatcctggctgaagccgccgagggtaaaatcgat
attctgattggcacgcataagctgctgcaaagcgacgttaagatgcgcgatctggggcta
ttgattgtcgatgaagagcaccgtttcggcgttcgccacaaagaacgtattaaagcgatg
cgtgccgatgtcgatattctgacgcttaccgcaacgcctattccgcgaaccttgaatatg
gccatgagcggtatgcgcgatctgtcgatcatcgccacgccgccggcccgtcgcctggcg
gtgaaaaccttcgtgcgcgagtacgatagtctggtggtacgcgaagccattctgcgtgaa
accttgcgcggtggtcaggtgtactatctgttcaacgacgttgaaaacattcagaaaacc
gcggataaacttgcggaattggtgccggaggcgcgtatcgctatcggccacggtcagatg
cgcgagcgtgagctggaacgagtgatgaatgatttccaccaccagcgtttcaacgtgctg
gtgtgtaccaccatcatcgagaccgggatcgatatcccgaccgcgaacaccatcatcatc
gaacgagccgatcacttcggtctggcgcagcttcaccagctgcgcgggcgcgtgggtcgt
tcccaccaccaggcctatgcctggctgttaacgccgcacacgaaagcgatgacgaccgat
gcgcaaaagcgtctggaagccattgcctcgctggaagatttaggtgcaggatttgcgctg
gcgacccacgaccttgaaattcgtggcgcaggcgagctgctgggtgaaggccagagtggg
caaatggaatctatcggcttctcgctgtatatggagatgctggagaacgctgtcgatgcg
ctcaaggaagggcgcgagccgtcgcttgaagatctcaccagccagcagacagaagtcgag
ctgcggatgccgtcattgctgccggatgactatatcccggatgtgaatacccgcctgtca
ttctacaagcgtatcgccagcgctaagggcgagcatgagcttgacgagatcaaggttgaa
ttgattgaccgcttcggtctgttaccggacgccgcacgcaatctgctggatattgcccgt
ttgcgtcagcaagcgcagaagcttgggattcgcaaactggaaggcaatgagaaaggcggc
gtgatcgagtttgccgagaaaaatcacgtgaatccatcgtggcttatcggtctgctgcaa
aaacaaccgcagcactaccgtctggacggcccaacgcgtctcaggttcttccaggagctc
gccgagcgtaaaacccgcatggactgggttcgccagtttatgcagcaactcgaagaaaac
gccctcgcctaa
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