Kluyvera intermedia: NCTC12125_03525
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Entry
NCTC12125_03525 CDS
T06042
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kie
Kluyvera intermedia
Pathway
kie03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kie00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC12125_03525 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kie03021
]
NCTC12125_03525 (rpoC)
03400 DNA repair and recombination proteins [BR:
kie03400
]
NCTC12125_03525 (rpoC)
Enzymes [BR:
kie01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC12125_03525 (rpoC)
Transcription machinery [BR:
kie03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC12125_03525 (rpoC)
DNA repair and recombination proteins [BR:
kie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC12125_03525 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
VDZ85355
LinkDB
All DBs
Position
1:complement(3245630..3249853)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELACPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENGEFVATTSIKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKYEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMGKGDGEQVAGGETVANW
DPHTMPVITEVSGFLRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQISAGDALARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEITGIISFGKETKGKRRLVITPLDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIDTAGSSDFLEGEQVEYSRVKIANRDLEANGKVAATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEQPA
APQVTAEDASASLAELLNAGLGGSDKD
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaagcctgagcgtgacggccttttctgcgcccgt
atctttgggccagtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgtcgtgaa
cgcatgggccacatcgagctggcatgtccaactgcgcacatctggttcctgaaatcgctg
ccgtcccgtatcggtctgctgctcgatatgccactgcgtgatatcgaacgcgtactgtac
ttcgaatcatatgttgttatcgaaggcggtatgaccaacctggaacgtcaacagattctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgatgcgaagatg
ggtgcggaagctatccaggccctgctgaaaagcatggatctggagcaagagtgtgaaact
ctgcgcgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgt
atcaaactgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggtggtcgtttc
gcaacatcagatctgaacgatctgtatcgtcgcgttatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgcctgacatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggtcgatgccctgctggataacggccgtcgcggtcgtgcgatcaccggttctaac
aagcgtcctctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggaactgttcaaaccattc
atctacggcaagctggagctgcgtggcctggccaccaccatcaaagccgctaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctggatgaagttatccgcgaacaccca
gtgatgctgaaccgtgctccaacactgcaccgtctgggcatccaggcgtttgagccagta
ctgatcgaaggtaaagccatccagctgcacccgctggtctgtgcggcttataacgccgac
ttcgatggtgaccagatggcagttcacgtaccgctgacgctggaagcccagttggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggccctaaagaagctgagcgtatctatcgcgcaggt
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatacgaaaaagatgaaaac
ggcgaattcgtcgcgaccaccagcattaaagacacgaccgttggccgtgctattttgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagct
atctccaaaatgctgaacacctgttaccgcattctgggcctgaagccgaccgtaatcttc
gctgaccagaccatgtacaccggctttgcctatgcagcgcgctcaggcgcatctgttggt
atcgacgacatggttatcccagagaagaaatacgaaatcatcagcgaagcggaagctgaa
gttgctgagatccaggagcagttccaatctggtctggttaccgctggcgaacgttataac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggacaac
ctgcaaaccgaaaccgttattaaccgtgacggcgtcgaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcagctg
gccggtatgcgtggtctgatggctaagccagatggttccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctactcacggtgctcgt
aaaggtctggcggataccgcactgaaaacagctaactccggttatctgacacgtcgtctg
gttgacgttgctcaggatctggttgttactgaagatgactgtggcacgctggaaggcatc
accatgaccccggttatcgagggtggtgatgttaaagagccactgcgcgatcgcgtattg
ggtcgtgtgactgctgaagacgttctgaagccgggtacggcggatattctggttccacgc
aacacgctgctgcacgaacagtggtgtgacctgctggaagagaactccgttgactccgtc
aaagtgcgttccgttgtatcctgtgacaccgactttggtgtatgtgcgcactgctacggt
cgtgacctggcgcgtggtcacatcatcaacaaaggtgaggctatcggcgttatcgcggca
cagtccatcggtgaaccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatctagcatccaggtgaaaaacaaaggtagcatcaagctc
agcaacgcgaagtcggttgtgaactccagcggtaaactggtgatcacttctcgtaacacc
gagctgaaattgatcgacgaattcggtcgtaccaaagaaagctacaaagtgccttacggt
tccgtgatgggcaaaggtgatggtgagcaggttgctggcggcgagaccgtagcaaactgg
gatccgcacaccatgccagttatcactgaagtcagcggcttcttgcgcttcactgacatg
atcgacggccagaccattactcgtcagaccgacgagctgaccggtctgtcatcgctggtt
gttctggattctgcagagcgtacggcgggtggtaaagacctgcgtccagccctgaaaatc
gttgatgctaacggtaacgatgttctgatccctggcaccgatatgcctgcgcagtacttc
ctgccgggtaaagcgattgttcagttggaagatggcatccagatcagtgcgggtgatgct
cttgcgcgtattcctcaggaatccagcggtaccaaggatatcaccggtggtctgccacgc
gttgcggatctgttcgaagcacgtcgtccgaaagagccagctatccttgcggaaattacc
ggtatcatttccttcggtaaagaaaccaaaggcaaacgtcgcctggttatcactccgtta
gacggtagcgatccatacgaagagatgattccaaaatggcgtcagctcaacgtgttcgaa
ggcgaacgtgtagaacgtggtgacgtggtttccgatggtccagaagcaccgcacgacatc
ctgcgtcttcgtggcgtacacgcggtaacgcgttacatcaccaacgaagtacaggacgtt
taccgtctgcaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaagcaaccatcgatactgctggtagctccgacttcctggaaggcgaacaggtt
gaatactctcgcgttaagattgctaaccgcgatctggaagcgaatggcaaagtggctgca
acttatgcacgcgacctgctgggtatcaccaaagcgtctctggcaaccgagtcgttcatc
tctgccgcatcgttccaggagaccacacgtgtcctgaccgaagcagccgttgcgggtaaa
cgtgacgaactgcgtggcctgaaagagaacgttatcgtgggtcgtctgattccagcgggt
accggttatgcgtatcaccaggatcgtatgcgccgtcgcgctgcaggcgaacagccagca
gcaccgcaggtaactgcggaagatgcatctgcaagcctggcagaactgctgaacgcaggt
ctgggtggttctgacaaagactaa
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integrated database retrieval system
