Kineobactrum salinum: G3T16_00945
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Entry
G3T16_00945 CDS
T06468
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
kim
Kineobactrum salinum
Pathway
kim03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G3T16_00945 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kim03400
]
G3T16_00945 (ligD)
Enzymes [BR:
kim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G3T16_00945 (ligD)
DNA repair and recombination proteins [BR:
kim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G3T16_00945 (ligD)
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Ortholog
Paralog
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GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QIB64188
UniProt:
A0A6C0TX27
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All DBs
Position
complement(208104..210689)
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AA seq
861 aa
AA seq
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MEKALNRYSRKRNFEITPEPAGDAVHHRPRKDSDAPVFVVQKHAASQLHYDFRLELEGTL
KSWAVPKGPSLDPAVKRLAVQVEDHPLSYASFEGHIPEGQYGAGDVIVWDQGEWEPEGDA
LEGYRKGRLRFSLRGRKLSGSWSLVRTGGGKKAAKKEQWLLLKKRDDAARSGDGDILKER
PESVVSGALLRDDEAVRQSPNRKSPRKRKARSSRPVSIPEQFAPQLATLVTQPPPGHWRY
ELKFDGYRILARISAGDVRLFTRNGHDWTARFPAQSKALEALALGDSWLDGEAVVLDAKG
MPDFQALQNAFRRHRSQDIVYYLFDAPFLDGEDWRNRPLEERRMALEERLQRQPAEAVRY
SETLEARDYRDIYSRICDMSLEGVIGKRANSHYTSRRSPDWIKLKCRLRQEFIVLGYTDP
GGSRPGFGSLLLGLHEAVGSKEILYAGRVGTGFSQAALKELSTTLRKLERKRSPVAHPEQ
VPDRRGVHWVQPKLVCEVEFAQWTDEKYVRQATFLSLRSDKQPREITYEPVLPASGLTSP
QDQAPPPEASRSKDSGRVNKKAHEQVAGIAISHPDRILDEDSGMRKVELARWYEAIADWI
MPELKGRPVALLRAPEGVGGEQFFQKHMQGMAIPSLRKLDPGLDPGHAPLMEINSTRALV
GAVQMGCIELHTWGATKDRIERPDRIVLDLDPDPELPWRYMIEATRLLLSVLDDLQLESW
LKTSGGKGMHVIVPLARHAGWDTVKAFAKSISEFMTAELPERFTARMGPRNRRGKIFIDY
LRNHRGASTVAAYSVRARPGLPVSVPIRRSELEQLSSAAQWTTGNLQQRLRQLSADPWQG
YSNRQRLRQSMWRKLGAKSPG
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaggccctgaacagatactcgcggaagcgcaatttcgagatcacgcccgagccc
gccggggatgctgtccaccaccggccacgtaaggactcggacgcgcctgtctttgtagtc
caaaaacatgccgcctcacaactgcattacgatttccggttggaactggagggcacgctg
aagagctgggcggtccccaaggggcccagtctggatcctgcggtaaaaagactggccgtg
caggtggaagaccaccccttgtcctatgcgagctttgaaggtcacattcctgagggccag
tacggtgccggtgatgtcatcgtctgggaccagggcgaatgggaaccagagggcgatgca
ctggaaggctaccggaaaggcagactccgctttagcctgcgtggccggaaactgtctgga
agctggagcctggtccgcaccggcggcgggaagaaggcagccaaaaaagagcaatggttg
ttgttaaaaaaacgtgatgatgcggcgagaagtggcgacggagacatcctgaaggaacgc
ccggaaagtgtcgtgagtggcgccctgttgagggacgatgaagctgttcgccagtctcca
aaccgcaaaagtcccaggaaaaggaaggcgcgcagctcccgcccggtatcaatacctgag
cagtttgcgccacagcttgccaccctggtaacgcagcctcctccgggccactggcgctat
gaactcaaatttgatggctaccggatactggcgcgcatcagcgccggtgacgtgcggctg
tttacacgcaatggtcacgactggaccgcgcgttttcccgctcagtccaaggcactggaa
gcccttgcactgggcgacagttggctggatggcgaagcagtggtgctggacgcgaagggc
atgccggatttccaggcgctacagaatgccttccggcgtcatcgcagtcaggatattgtc
tactatctttttgacgcgccctttctcgatggagaggattggcgcaacaggccactggag
gagcgccggatggcgctggaggagcggctacagcgacagccggcagaggcggtgcgctat
tccgaaaccttggaggcgcgagactatcgtgacatctatagccgtatttgtgacatgtcg
ctggaaggtgttattggcaagcgcgcgaacagtcattatacctcccggcgcagccctgac
tggataaagctcaagtgtcgcctgcgtcaggaattcattgttctcggttacaccgatccc
ggtggcagccggccgggattcggctcgctgctgctggggctgcacgaggcggtcggcagc
aaagaaatactctacgcggggcgggtgggaacaggcttcagtcaggctgcgttgaaagaa
ttatcgacgaccctgcgcaagctggagcgaaaacgttcccccgtggcacacccggagcag
gttcccgaccggcggggagttcactgggtgcagccgaaactggtttgcgaggtcgagttt
gcgcaatggactgatgaaaaatatgtccgccaggccactttcctttccctgcgcagcgac
aagcagccacgggaaatcacctacgagcccgtgctgccggcatcgggactgacgtcgcca
caggaccaagccccgccaccggaggcgagccggagcaaggattctggccgtgtcaacaag
aaagcccatgagcaggtggccggcattgctatcagccatcccgaccggatactggatgag
gacagcggtatgcgcaaggtggagctcgcacgctggtatgaagcgattgcggactggatc
atgccggagttgaaaggccgtccggtggcgctgctgcgggcaccggagggcgtgggcggg
gagcagttcttccagaagcatatgcagggtatggcgattccgagcctccggaaactggat
cccggtctcgatccgggacatgcgccgttgatggagattaactccaccagggctctggtc
ggcgcggtacagatgggttgcattgagttgcatacctggggggctaccaaagacaggatc
gaacggcctgaccggattgtgctggatctggatcccgaccccgaactgccgtggcgctac
atgatcgaggcgacccgcctgttgctatcggtactcgacgatctgcaactggagtcgtgg
ctgaaaacaagcggtgggaagggcatgcatgtcattgtgccgctggcccgtcacgccggc
tgggatacggtgaaggcctttgcgaagagcatcagcgagttcatgacggccgagctgccc
gagcgattcacggccaggatggggcctcgcaatcgcaggggaaaaatcttcatcgactac
ctgcgcaatcaccgtggcgccagtaccgtggcggcttattccgtgcgcgcccgaccagga
ctgcccgtttcagtgccgatcaggcgcagcgaactggagcaattaagcagcgccgcgcaa
tggactacaggcaacctgcagcagcgcctgcggcaactgtcagcagacccgtggcagggc
tacagcaaccgacaaagactgcgccagagtatgtggcgcaaacttggcgcaaagtctcca
ggctaa
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