KEGG   Kineobactrum salinum: G3T16_00945
Entry
G3T16_00945       CDS       T06468                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
kim  Kineobactrum salinum
Pathway
kim03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:kim00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    G3T16_00945 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:kim03400]
    G3T16_00945 (ligD)
Enzymes [BR:kim01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     G3T16_00945 (ligD)
DNA repair and recombination proteins [BR:kim03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     G3T16_00945 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: QIB64188
UniProt: A0A6C0TX27
LinkDB
Position
complement(208104..210689)
AA seq 861 aa
MEKALNRYSRKRNFEITPEPAGDAVHHRPRKDSDAPVFVVQKHAASQLHYDFRLELEGTL
KSWAVPKGPSLDPAVKRLAVQVEDHPLSYASFEGHIPEGQYGAGDVIVWDQGEWEPEGDA
LEGYRKGRLRFSLRGRKLSGSWSLVRTGGGKKAAKKEQWLLLKKRDDAARSGDGDILKER
PESVVSGALLRDDEAVRQSPNRKSPRKRKARSSRPVSIPEQFAPQLATLVTQPPPGHWRY
ELKFDGYRILARISAGDVRLFTRNGHDWTARFPAQSKALEALALGDSWLDGEAVVLDAKG
MPDFQALQNAFRRHRSQDIVYYLFDAPFLDGEDWRNRPLEERRMALEERLQRQPAEAVRY
SETLEARDYRDIYSRICDMSLEGVIGKRANSHYTSRRSPDWIKLKCRLRQEFIVLGYTDP
GGSRPGFGSLLLGLHEAVGSKEILYAGRVGTGFSQAALKELSTTLRKLERKRSPVAHPEQ
VPDRRGVHWVQPKLVCEVEFAQWTDEKYVRQATFLSLRSDKQPREITYEPVLPASGLTSP
QDQAPPPEASRSKDSGRVNKKAHEQVAGIAISHPDRILDEDSGMRKVELARWYEAIADWI
MPELKGRPVALLRAPEGVGGEQFFQKHMQGMAIPSLRKLDPGLDPGHAPLMEINSTRALV
GAVQMGCIELHTWGATKDRIERPDRIVLDLDPDPELPWRYMIEATRLLLSVLDDLQLESW
LKTSGGKGMHVIVPLARHAGWDTVKAFAKSISEFMTAELPERFTARMGPRNRRGKIFIDY
LRNHRGASTVAAYSVRARPGLPVSVPIRRSELEQLSSAAQWTTGNLQQRLRQLSADPWQG
YSNRQRLRQSMWRKLGAKSPG
NT seq 2586 nt   +upstreamnt  +downstreamnt
atggaaaaggccctgaacagatactcgcggaagcgcaatttcgagatcacgcccgagccc
gccggggatgctgtccaccaccggccacgtaaggactcggacgcgcctgtctttgtagtc
caaaaacatgccgcctcacaactgcattacgatttccggttggaactggagggcacgctg
aagagctgggcggtccccaaggggcccagtctggatcctgcggtaaaaagactggccgtg
caggtggaagaccaccccttgtcctatgcgagctttgaaggtcacattcctgagggccag
tacggtgccggtgatgtcatcgtctgggaccagggcgaatgggaaccagagggcgatgca
ctggaaggctaccggaaaggcagactccgctttagcctgcgtggccggaaactgtctgga
agctggagcctggtccgcaccggcggcgggaagaaggcagccaaaaaagagcaatggttg
ttgttaaaaaaacgtgatgatgcggcgagaagtggcgacggagacatcctgaaggaacgc
ccggaaagtgtcgtgagtggcgccctgttgagggacgatgaagctgttcgccagtctcca
aaccgcaaaagtcccaggaaaaggaaggcgcgcagctcccgcccggtatcaatacctgag
cagtttgcgccacagcttgccaccctggtaacgcagcctcctccgggccactggcgctat
gaactcaaatttgatggctaccggatactggcgcgcatcagcgccggtgacgtgcggctg
tttacacgcaatggtcacgactggaccgcgcgttttcccgctcagtccaaggcactggaa
gcccttgcactgggcgacagttggctggatggcgaagcagtggtgctggacgcgaagggc
atgccggatttccaggcgctacagaatgccttccggcgtcatcgcagtcaggatattgtc
tactatctttttgacgcgccctttctcgatggagaggattggcgcaacaggccactggag
gagcgccggatggcgctggaggagcggctacagcgacagccggcagaggcggtgcgctat
tccgaaaccttggaggcgcgagactatcgtgacatctatagccgtatttgtgacatgtcg
ctggaaggtgttattggcaagcgcgcgaacagtcattatacctcccggcgcagccctgac
tggataaagctcaagtgtcgcctgcgtcaggaattcattgttctcggttacaccgatccc
ggtggcagccggccgggattcggctcgctgctgctggggctgcacgaggcggtcggcagc
aaagaaatactctacgcggggcgggtgggaacaggcttcagtcaggctgcgttgaaagaa
ttatcgacgaccctgcgcaagctggagcgaaaacgttcccccgtggcacacccggagcag
gttcccgaccggcggggagttcactgggtgcagccgaaactggtttgcgaggtcgagttt
gcgcaatggactgatgaaaaatatgtccgccaggccactttcctttccctgcgcagcgac
aagcagccacgggaaatcacctacgagcccgtgctgccggcatcgggactgacgtcgcca
caggaccaagccccgccaccggaggcgagccggagcaaggattctggccgtgtcaacaag
aaagcccatgagcaggtggccggcattgctatcagccatcccgaccggatactggatgag
gacagcggtatgcgcaaggtggagctcgcacgctggtatgaagcgattgcggactggatc
atgccggagttgaaaggccgtccggtggcgctgctgcgggcaccggagggcgtgggcggg
gagcagttcttccagaagcatatgcagggtatggcgattccgagcctccggaaactggat
cccggtctcgatccgggacatgcgccgttgatggagattaactccaccagggctctggtc
ggcgcggtacagatgggttgcattgagttgcatacctggggggctaccaaagacaggatc
gaacggcctgaccggattgtgctggatctggatcccgaccccgaactgccgtggcgctac
atgatcgaggcgacccgcctgttgctatcggtactcgacgatctgcaactggagtcgtgg
ctgaaaacaagcggtgggaagggcatgcatgtcattgtgccgctggcccgtcacgccggc
tgggatacggtgaaggcctttgcgaagagcatcagcgagttcatgacggccgagctgccc
gagcgattcacggccaggatggggcctcgcaatcgcaggggaaaaatcttcatcgactac
ctgcgcaatcaccgtggcgccagtaccgtggcggcttattccgtgcgcgcccgaccagga
ctgcccgtttcagtgccgatcaggcgcagcgaactggagcaattaagcagcgccgcgcaa
tggactacaggcaacctgcagcagcgcctgcggcaactgtcagcagacccgtggcagggc
tacagcaaccgacaaagactgcgccagagtatgtggcgcaaacttggcgcaaagtctcca
ggctaa

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