Phytobacter ursingii: AB182_12810
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Entry
AB182_12810 CDS
T03950
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kin
Phytobacter ursingii
Brite
KEGG Orthology (KO) [BR:
kin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kin03019
]
AB182_12810
Enzymes [BR:
kin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AB182_12810
Messenger RNA biogenesis [BR:
kin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AB182_12810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
T2SSE
NACHT
ResIII
AAA_16
PhoH
AAA_11
NTPase_1
ABC_tran
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AKL12139
LinkDB
All DBs
Position
complement(1973491..1977393)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTLSDLHQQLDSLMLRDRLRFARRLQGAKKVKNPEAQQGIFQAMRQEMNEAAGK
VVLREASRPAITYPDNLPVSQKKQAILDAVRDNQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQTEPGDCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQEAPGDILIFMSGE
REIRDTADALNKRDLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCRVDFLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEFTGARNARFSIFPGSGL
FKKPPKWVIVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRSYSEPHWERSQGAVMATE
KVTVYGLPIVAARSVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRDNLKLRAEIEELE
HKSRRRDILVDDDTLFEFYDQRISHDVISARHFDSWWKKASHETPDLLNFEKSMLIKEGA
EKVSKLDYPNFWHQGNLKLRLTYQFEPGTDADGVTVHIPLPLLNQVDESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLEALERELRRMTRHTIDREDW
HWDQVPDHLKITFRVVDDKNKKLAEGPSLTALKESLKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLDQQQAMWNGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIDEAGGPVWTEEGFTALHEK
VRADLNETVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMSGLVYRGFVTG
NGFRRVGDTLRYLHAIEKRLEKLAVDPHRDRAQMLKVEQVQQAWQQWLNKLPPARREDEE
VKAIRWMIEELRVSYFAQQLGTPYPVSDKRVLQAMEQVNA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacagaaattgaccttatccgatctacatcagcagttagactcgctgatg
ctacgcgatcggttgcgttttgcccgtcgcttgcaaggggcaaagaaagttaaaaatcct
gaagcacagcagggcatttttcaggcaatgcgtcaggagatgaacgaggccgcagggaag
gttgtgctgcgcgaggcgtctcgtcctgccattacctatcccgataacctgccggtcagc
cagaagaaacaggcgattcttgacgccgtgcgtgacaatcaggtcgtgattgttgcgggg
gaaaccggctccgggaaaaccacgcagttaccaaaaatctgtatggaactggggcgtggg
gtgaaggggctgattggccatacccagccgcgtcgtctggcggcgcgtaccgtcgcgaac
cgtattgccgaagagctgcaaaccgagccgggcgattgtatcggctataaagtccgtttt
agcgaccatgtcagcgacaacacgatggtcaagctgatgaccgacggtatattgctggca
gaaattcagcaggatcgcctgttgatgcagtacgacaccatcatcattgatgaagcgcac
gagcgcagcctgaatattgatttcctgctcggttacctgaaagagttattaccccggcgt
ccggatctgaaaatcatcattacctcggcgaccatcgatccggaacgtttctcgcgccac
tttaataatgcgccgatcatcgaagtatcggggcgtacctatcccgtggaagtgcgctac
cgtccgattgtcgaagaagcggacgataccgagcgcgatcagttacaggccattttcgat
gcggttgacgaactcagtcaggaagcgccgggcgatattctgatttttatgagcggtgaa
cgtgaaatccgcgataccgccgatgcgctgaacaagcgcgatctgcgccataccgaagtg
ctgccgctgtacgcgcggctgtcgaacagcgaacagaaccgcgtgtttcagtcgcacagc
gggcggcgcattgtgctggcgaccaacgtagcggaaacctcgctgacggtgccgggcatt
aaatatgtgattgatcccggtaccgcgcgtatcagccgctacagctaccgtaccaaagta
caacgcctgccgattgagccggtctcccaggcttccgcaaaccagcgtaaaggccgttgc
gggcgtgtttccgaagggatttgtattcgtctttattcggaagatgatttcctgtcgcgc
ccggaatttaccgacccggaaattctgcgtaccaaccttgcgtccgtcattctgcagatg
accgcgctgggattgggcgatatcgccgcgttcccgtttgttgaagcgccggataaacgc
aatatccaggacggtgtgcgactgctggaagaactcggcgctatcaccactgacgagcag
gccaccgcctacaaattaaccccgatggggcgtcagctcagccagttgccggtagaccca
cgtctggcccgtatggtgctggaagcgcaaaaacatggctgtgtgcgcgaagcgatgatc
attacttcggcgctttccattcaggatccgcgcgagcgtccgatggacaagcagcaggcg
tccgatgaaaaacatcgccgcttccacgacaaagaatccgatttcctcgcctttgtgaac
ctgtggaactacctcggcgagcagcaaaaagcactgtcgtcgaaccagttccgccgccag
tgccgcgtcgattttcttaactacttgcgcgtgcgcgagtggcaggatatctacactcaa
ctgcgccaggtagtaaaagagcttggtattccggtgaacagtgaaccggcagagtatcgt
gaaatccatattgcgttgctgaccgggctgctgtcgcatatcgggatgaaagatgccgat
aagcaggagtttaccggtgcgcgtaatgcccgcttttcgatttttccgggttccgggtta
ttcaaaaagccgccgaagtgggtcattgtggccgaactggtggaaaccagccgactgtgg
gggcgcatcgcggcgcgtatcgatccggaatgggtggaacctgtcgcccaacacctgatc
aaacgttcttacagtgaaccgcattgggaacgttcgcagggtgcggtgatggcaacggag
aaggtaacggtttacggcctgccgattgtcgccgcccgcagcgtgaattatagccagatt
gacccggccctgtgccgtgagttgttcattcgccacgcgctggtggaaggtgactggcag
acgcgccatgcctttttccgcgacaatctcaaactgcgcgctgaaatcgaagagcttgaa
cacaaatcccgtcgccgcgacattctggtcgatgacgatacgttgtttgagttctatgac
cagcgcatcagccatgacgtgatctcggcccgccatttcgatagctggtggaagaaagcg
agccatgaaaccccggatctgctcaactttgaaaagagcatgctcatcaaagaaggggcg
gagaaggtcagtaagctggattaccccaatttctggcatcagggcaacctgaaactgcgt
ctgacctatcagtttgaaccgggtacggatgccgatggtgtgacggtgcatattccactg
ccgctgcttaaccaggtagacgaaagcgggtttgaatggcaaattccggggctgcgtcgt
gagctggtgattgcgttgattaaatcattacccaaaccagtaagacgtaactttgtaccg
gcgccaaactacgcggaagcgtttttaggccgcgtaacgccgcttgaactgccactgtta
gaggcgctggagcgtgagcttcggcgcatgaccaggcacacgattgatcgcgaagactgg
cactgggatcaggttcccgaccacctgaaaatcaccttcagggtggtggatgataagaac
aagaaactcgccgaaggtccgtcgttaactgcactgaaagaatcgctgaaaggtaaagtt
caggagacgctttccgcggtagcggacgacggtattgagcaaagcgggttgcatatctgg
agcttcggtcagcttccggaaagctacgagcagaaacgcggaaactataaggtgaaggcc
tggccggcgctggtagatgagcgcgacagtgtagccattaagttgtttgataatccgctg
gatcagcagcaggcgatgtggaacgggttacgtcgtctgttgttgttaaatattccctcg
ccaatcaaatatttgcacgagaagttgccgaacaaagccaagctaggtctgtactttaac
ccgtatggcaaggttctggacttgattgatgactgcatctcctgcggcgttgataagttg
attgacgaagcgggcggaccggtctggacggaagaggggtttacagcgctgcacgaaaaa
gtccgggctgacctgaatgaaacggtggtggatatcgccaaacaggtcgaacaaatcctc
accgcggtgttcaatatcaacaagcggctgaaagggcgcgttgatatgaccatggcactg
gggttgtcggatatcaaagcgcaaatgagcgggctggtttatcgcggtttcgttaccggc
aatggcttccgccgcgtgggtgatacgctgcgttacctgcacgcaattgaaaagcgtctg
gagaagctggcggttgatccgcaccgcgaccgggcacaaatgctgaaagtcgaacaggtt
cagcaggcgtggcagcagtggctgaataagctaccgccagcgcgtcgtgaagatgaagag
gtgaaagcgattcgctggatgattgaagagcttcgcgtcagttattttgcgcaacaactc
ggcacgccgtatccagtctccgataagcgcgtgttgcaggcgatggaacaggtgaacgcg
taa
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