Koleobacter methoxysyntrophicus: H0A61_00811
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Entry
H0A61_00811 CDS
T07090
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kme
Koleobacter methoxysyntrophicus
Pathway
kme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H0A61_00811 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kme03400
]
H0A61_00811 (mfd)
Enzymes [BR:
kme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H0A61_00811 (mfd)
DNA repair and recombination proteins [BR:
kme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H0A61_00811 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QSQ08486
UniProt:
A0A8A0RMQ4
LinkDB
All DBs
Position
complement(861675..865211)
Genome browser
AA seq
1178 aa
AA seq
DB search
MKGLSVLLQEDPGFNALIEKIEKQHRKIMIYGLSESQRAYVTSAIWDSSQKSQLIITPDS
LAARRLWEDLKFFLPGENVYIFPVGEILPYEVAAHSTEITAQRLMVMEKLLSGERAVVIA
PVNALFQKLVPSRVFEELSFTVAVGDTLNVRDFSEKLVIMGYERVDMIEGHGHFSIRGGI
IDIFPLTADSPYRIELFDDEVDSIRLFDIFSQRSIVKVEKVNIFPAREMILTRQMAEQGR
NKIARELDERIKLFQRINKPESGDNLKERISHHLALMEENLYFEGLEMYISYFYDRTNTI
MDYFKCGVLTSIYDPERVIEASRLFSTEHEEIYKQLLEKGQILASQSNVYHSSEELLMFL
SQNSSLYFSHLPVRIDDFPVDEEMTFASRAMHPFYGKIDLLVDDIKTWRKKGFRIILLAG
TEDRGRRFRNNLQDNDINPLFLKSIPDVIPPGTVVVTEGSVEKGFEFPGVGLVVVSDWEI
FGKAKRKKSIKRKADDGIRISTFSELSVGDYVVHVNHGIGRYTGIKTIEIQGNRRDYIGV
KYHGGDMLYIPTDQVHLIQKYIGSDDSPPKLNKLGGVEWARVKNRVKESIRDMADDLIKL
YAAREAVKGYAFSPDTPWQKEFEDLFPYEETPDQLQAVEEVKRDMERPRPMDRLLCGDVG
YGKTEVALRAAFKAVMDGKQVGVLVPTTILAQQHYQTFTERFAGFPVTLGLLSRFKTHRE
QREVIAGLKTGTVDIVIGTHRLLQKDVKFKNLGLLIVDEEQRFGVAHKERLKQMRKNVDV
LTLTATPIPRTLHMALSGIRDMSLIETPPEDRYPVQTYVLEYNDLLVREAILRELARKGQ
VYYVYNRVDTIDKEAARIASLVPEARIAVAHGQMRESELEQVMLDFYEGKYDILVCTTII
ESGLDIPNVNTLIVTHGDKLGLSQLYQLRGRVGRSNRVAYAYITYHKGRRLTEIAQKRLQ
AIRDFTEFGAGFKIAMRDLEIRGAGNLLGPQQHGHMMAVGYELYCKLLNETIKELRGEVV
SEEIEPAVDFQVSAYIDDGYIQLQDQKIEFYKRIAGAGSIEEIYGIEEEMEDRFGDIPEN
VRNLLEIAVIKIMARELGIISIVQNGDSVTFTTGEFLKNQEDDIKKLVNRYPRRFDLSRG
KAMSFTYRAKDAKGYHLLKKVRKILEELKTFNSEGIVV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtttatcggttctgcttcaggaagaccccgggtttaacgctctgattgagaag
atagaaaaacaacatagaaagattatgatatacggcctctctgagtcacagagggcttat
gttacatccgccatatgggattcaagccaaaagtcccagctgatcatcactcctgactcc
ctcgcagcccgaaggttgtgggaagatttaaagttctttttgccgggggaaaatgtctat
attttcccggtaggagaaatactcccttatgaagttgccgctcacagcacagaaataacg
gcccagagattgatggtaatggaaaaacttttatcaggggaaagggctgtggtaattgca
cctgttaatgccctttttcaaaaactggttcccagccgggtctttgaggaactttcgttt
actgttgcagtaggagatacactgaatgtaagggatttcagtgaaaagctggtaattatg
ggatatgaaagagtggatatgatcgaagggcatggacatttcagtataaggggcgggata
atagatatattcccccttactgcagatagtccttacagaatagagctttttgatgatgaa
gtggattctataagactctttgatatattcagccagagatcgatagtaaaggttgaaaag
gtcaatattttccccgcaagggaaatgatccttacacgtcaaatggcagaacagggcaga
aataaaattgcgcgagagcttgatgaaaggataaaattgttccagaggattaataaaccc
gaatcaggggacaacctgaaagagagaataagccaccacctcgcccttatggaggaaaat
ctttactttgaagggctggagatgtatatttcatatttctatgaccgtacaaatacaata
atggattactttaaatgcggtgtattaacctcaatttatgaccctgaaagggtaattgaa
gcatcccgcttattctcaacagaacacgaggagatttataaacaacttctggaaaagggt
caaatccttgcatctcagtcaaatgtttatcattcttctgaagagctcttaatgtttctt
tcgcaaaatagttcactttatttttcacatcttccggttaggattgacgattttccggta
gatgaagaaatgacctttgcaagcagggctatgcaccctttttacggcaaaatagacctt
ttggtagatgacataaaaacatggaggaaaaaaggctttaggattatcctcctggccggc
actgaagacagagggcgtaggttccggaacaatctccaggataatgatataaatccttta
tttttaaaatctatacccgatgtaatcccgccgggaaccgttgtggtcacagaggggagc
gttgaaaagggctttgaatttccgggagtgggacttgtagtagtttctgattgggaaatc
ttcggaaaagcaaaaaggaagaagtcgataaagagaaaggccgatgacggtattcggatt
tccaccttttctgaactcagtgtgggagattatgtggtacatgttaaccacggcataggc
agatatacgggtataaagaccattgaaatacaggggaatcgaagggattatattggggta
aaataccatgggggtgatatgctttacatccccacggaccaggtccaccttatccaaaaa
tatatcggttctgatgactcacctccaaaactcaacaaactcggaggcgtagaatgggcc
cgggtgaaaaacagggttaaggaatccataagggatatggctgatgatctgattaaactc
tatgcggccagagaggctgtaaaagggtatgccttttcacctgataccccgtggcagaag
gagtttgaagacctttttccatatgaggaaacccctgaccagcttcaggcagtagaagaa
gtgaaacgcgatatggaaaggccaagaccaatggaccggctcctatgcggagatgtaggt
tacgggaaaacggaagttgcattaagggcagccttcaaagcagtaatggacggaaaacag
gtaggggttttggtgccgacaactattctggcccagcagcactaccaaacctttacggaa
aggtttgccgggttccccgttactttaggtttactcagccggtttaaaacgcatagggaa
caaagagaagttattgcgggcttaaagacggggacggtcgatatagttataggaacccac
cggcttctgcaaaaggatgtgaaatttaagaacctcggccttcttatagttgatgaggaa
cagcggtttggggttgcccacaaagaaaggctgaaacagatgcgcaagaatgtggatgta
ctgaccctaacggcaacacccattcccaggaccctccatatggccctatcagggatcaga
gatatgagccttatagaaacacctcctgaagacagataccccgttcagacctatgtcctt
gagtacaatgaccttttagtgagggaggccatcctcagggaattagccaggaaggggcag
gtatattatgtatataaccgggttgatacaatagacaaagaggcggcaaggattgcctca
ctggtccccgaagccagaatcgcagtcgcccacggtcagatgagggaaagcgaactcgaa
caggtaatgctggatttctatgaagggaaatatgacatacttgtatgtactaccattatt
gaatcgggcctggatatccctaatgtaaataccctgattgtaacccacggagacaaattg
gggctgtcccagctctatcagctgaggggaagagtcggcaggagcaacagggtggcgtat
gcatatataacctatcataaaggcagaaggcttacggaaatagcccagaagaggcttcag
gctatcagagactttacggaattcggtgcgggtttcaaaatagctatgagggacctggaa
ataagaggggcggggaaccttttgggtccccagcagcacggacatatgatggctgttgga
tacgagctgtactgtaagctgttaaacgaaacgattaaagaactgcgtggggaagtcgtc
agtgaagagatagaacctgctgtagattttcaggtcagcgcatatattgatgacggatat
atacagcttcaggaccagaaaatcgagttttataaacggatagccggtgcaggttctata
gaggagatatacggtatagaagaggaaatggaagacaggtttggggatatacccgaaaat
gtgaggaatctcctggaaatagctgttattaagattatggccagagaactgggtataata
tccattgtgcaaaatggagatagtgttacctttactaccggtgaattcttgaagaaccag
gaagatgatataaagaagctggtaaacagatatccaaggaggttcgatttaagccggggg
aaagctatgagttttacctacagagcaaaggatgcaaagggctatcacctgttgaaaaag
gtgagaaagatactggaagaattaaaaactttcaatagtgaggggattgtagtataa
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