Koleobacter methoxysyntrophicus: H0A61_01695
Help
Entry
H0A61_01695 CDS
T07090
Symbol
ligd
Name
(GenBank) Bifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
kme
Koleobacter methoxysyntrophicus
Pathway
kme03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H0A61_01695 (ligd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kme03400
]
H0A61_01695 (ligd)
Enzymes [BR:
kme01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H0A61_01695 (ligd)
DNA repair and recombination proteins [BR:
kme03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H0A61_01695 (ligd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
FecR_C
DUF6259
Motif
Other DBs
NCBI-ProteinID:
QSQ09334
UniProt:
A0A8A0RNC8
LinkDB
All DBs
Position
1780084..1781007
Genome browser
AA seq
307 aa
AA seq
DB search
MTVVSVEGAAINLTNIQKVLWPEDGITKGDYIKYLVDISPYILKYLKGRPMVFTRYPDGI
YGRSFYQKNCPGYAPEWIKTLSIKGSKREIKYIMIEDVKTLVWVGNQASIELHPWHSRAD
SLNYPDYAVFDLDPMENTDFNDALELAAALNKILALQGIKSYPKTSGATGLQVYVPLEPR
YTYKQVQDFTHFFSAVVVDAFPKKATIVRQVKGRGGKLYMDYLQNIRGKTIVAPYSVRPR
AGAPVSTPLNWDEVAGGRVNQKDYNIETIFDRLQKVGDPFSGVIEEKQNIDKILKYIEEN
RNQLKGF
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgtagtttccgtggaaggggctgcaattaacctgacaaatattcaaaaagtgctg
tggcccgaagacgggataaccaagggcgactatatcaagtatctggttgatatatcgcct
tatatcttaaagtaccttaaaggcaggcccatggtctttaccaggtatcccgatggtatt
tacggcaggtcattttatcaaaaaaactgtcccggttatgccccggagtggataaaaacc
ttgagcataaaagggtcaaaaagggagataaaatatataatgatagaggatgttaaaacc
cttgtatgggttggcaatcaggcttctatcgaacttcatccgtggcattccagggcggac
agcctgaattaccccgattatgcagtatttgacctggatcctatggaaaacaccgatttt
aacgatgcccttgaactggcagcggcactgaacaaaatccttgccctccagggtattaag
agctaccccaaaacttcgggggcaaccgggcttcaggtatatgtaccattagaacccagg
tatacctataaacaggtacaggattttacccattttttttcagccgttgtcgtcgatgct
tttccgaagaaagccaccatcgtaagacaggtgaagggaaggggaggcaaactgtatatg
gattaccttcaaaacatcaggggcaaaaccatagttgccccttacagtgtaaggcccagg
gcaggggctcccgtttctacgcccctgaactgggacgaagttgccggaggcagggtaaat
cagaaagattacaacattgagaccatatttgacagactccaaaaagtgggagacccgttt
tcaggagtaatagaagaaaaacagaacatcgataaaattttgaagtacattgaagaaaat
aggaaccaattaaagggtttttga
DBGET
integrated database retrieval system
