Kryptolebias marmoratus (mangrove rivulus): 108230941
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Entry
108230941 CDS
T05608
Symbol
brf1a
Name
(RefSeq) BRF1 RNA polymerase III transcription initiation factor subunit a isoform X1
KO
K15196
transcription factor IIIB 90 kDa subunit
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kmr03021
]
108230941 (brf1a)
Transcription machinery [BR:
kmr03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIB
108230941 (brf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
BRF1
TF_Zn_Ribbon
Cyclin_N
TcpS
Motif
Other DBs
NCBI-GeneID:
108230941
NCBI-ProteinID:
XP_017263065
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All DBs
Position
LG10:23052513..23117107
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AA seq
728 aa
AA seq
DB search
MSSRVCKSCGGSDIDVDPARGDAVCMGCGSVLEDNIIVSEVEFVESGGGGSLAVGQFVSS
DGGQRNPSFGDGHLSGLGSESRARTLQRAKEHVNTLGHQLQMSQHCLDTAFNFYKMALNK
SLTRGRKAAHVIAACIYLVCRTEGTPHMLLDLSDVLQVNVYVLGRTFLLLAKELCISAPA
IDPCLYIPRFAQMLEFGEKNHDVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLVAARLH
DFCRTVKEVVNVVKVCESTLRKRLNEFEDTPTSQLTIEEFMRIDLDQECDPPCFTAGLKK
KKYQQLEIELKKKIDDVEDEIQEYRDEIDAELEISRPKLKGAYAAYTKEDWKREDPEVAA
DEDSEDEDEEDELRAVAKHFGRELSDLSLEALIKLERARPEEEEEEEGPQQKGPSLAFIL
GTMPSSESLGVSASISSCVGNDKENDGAADSGELDLSGIDDTEIDLYLLSDHEIKVKTAL
WMAENSEYLKEQKEKEAKIAKEKELGIYKEKRPRRPPNRRLPIRARTADEAIGQMLEQKK
ISSKINYSVLKDLDTKPASSPARAAGPVQSPKKEPSTVRTTRRIQNPTRGQLNLSTPLST
LGKSRRSPAHRRRRPSAGWWWRAGPWSTMTELLMKRRRRRRSLVSAPWSCWAAAVTAAME
TTTKDSNLPTSVKRFPAGRKDICCSGGEPGTSGTSRALCLQVTQKLLTPGNPSLHLQQEE
FMSTEFKS
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgagctccagggtgtgtaagagctgcggcggctcggacatcgatgtggacccggcccgt
ggcgacgccgtctgcatgggctgtggctcggttctggaggacaacatcatcgtctccgag
gtggagttcgtggagtcaggcggcggcggctcgctggctgttggacagtttgtgtcctca
gacgggggacagaggaacccgtccttcggggacggacacctctccggtctcgggtccgag
tctcgagcgaggactctgcagagagctaaagagcacgtgaacacgctgggccaccagctg
cagatgagtcagcactgtctggacacggccttcaacttctacaagatggcgctcaacaag
agcctgacccgcgggcgcaaggcggcgcacgtcatcgccgcctgcatctacctggtgtgt
cgcaccgaggggacgccgcacatgctgctggatctcagtgacgttttacaggtcaacgtc
tacgtgttaggccggacgttcctcctgctggccaaagagctgtgcatcagcgccccggct
atagacccgtgcctgtacatcccccgcttcgcccaaatgctggagttcggtgagaagaac
cacgacgtgtccatgacggcgctgcggttggtccagaggatgaagcgggactggatgcac
acaggaaggaggccgtcaggactctgcggcgcagctctgctcgtcgcggctcgtttacac
gacttctgccgcaccgtcaaagaagtcgttaacgtggtgaaagtctgtgaaagcacgcta
agaaaaagactgaacgagtttgaggacacgcccaccagccagctgacgatagaagagttc
atgaggatcgatctggaccaagagtgcgacccgccgtgttttacagccggcctgaagaag
aagaaataccaacagttggaaatcgagctgaagaagaagattgacgacgttgaagatgaa
atccaggagtaccgggatgaaatcgacgcagagctggagatcagccgacccaagctgaaa
ggcgcgtacgccgcctacaccaaggaagactggaaacgtgaggacccggaggtggctgct
gatgaagactcagaggatgaagatgaagaagatgagctccgggccgtagccaaacacttc
ggcagggagctgtcggacctctcgctggaggctctgataaaactggagagggcgagaccg
gaggaggaggaggaagaggaggggccgcagcagaaaggcccgtcgctggccttcatcctg
gggacgatgccgtcttcagagtctctgggcgtctccgcgtccatcagcagctgcgtcggg
aacgacaaggagaacgatggtgctgctgacagcggcgagctggacctgagcgggatagat
gacacagagatcgatctgtatctgctgagcgatcatgaaatcaaagtcaagactgcgctg
tggatggctgagaactcggagtacctgaaggagcagaaagaaaaagaagcaaaaatagcg
aaggagaaggagctcgggatctacaaagagaaacggccgaggcgtcctccgaacagacgc
ctcccgatccgagccagaaccgcggacgaggccatcgggcagatgctggagcagaagaag
atctcctccaagatcaactacagcgtgctgaaagacctggacaccaagcccgccagcagc
ccggctcgcgcggctggcccggtccaatccccgaagaaggagccgtctaccgtcaggacc
accagacgcatccagaacccgacccgaggacagctgaacctcagcacgccgctcagcact
ctgggtaaaagccggcggtctccagcccaccgccggcgccgcccgtcagcggggtggtgg
tggagagcgggcccgtggtctacgatgacggagctgctgatgaagaggaggaggaggagg
aggagccttgtgtcagcgccatggagctgctgggcggcggcggttacggctgcgatggag
actacgacgaaggattctaacctcccaaccagtgttaaacgcttcccggcaggaaggaaa
gacatttgctgctctggaggagaaccgggaacctcaggaaccagtcgagcactttgcctt
caggtcactcagaagctgctgacgcctggaaacccatcactacacctgcagcaggaagag
tttatgtccacagagtttaaatcttag
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