Kryptolebias marmoratus (mangrove rivulus): 108244445
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Entry
108244445 CDS
T05608
Symbol
gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03022
Basal transcription factors
kmr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108244445 (gtf2h4)
09124 Replication and repair
03420 Nucleotide excision repair
108244445 (gtf2h4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kmr03021
]
108244445 (gtf2h4)
03400 DNA repair and recombination proteins [BR:
kmr03400
]
108244445 (gtf2h4)
Transcription machinery [BR:
kmr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108244445 (gtf2h4)
DNA repair and recombination proteins [BR:
kmr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108244445 (gtf2h4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
108244445
NCBI-ProteinID:
XP_017286151
UniProt:
A0A3Q2ZEE0
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All DBs
Position
LG5:20113612..20126502
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AA seq
463 aa
AA seq
DB search
MMKLRVQLQCKNLHEYLRELSPDVLDRLYNHPATCLAVFRELPSLAKNYVMRMLFLDQPL
PQAAVALWVRKDSQRDHDECVSVLTGLRLWHSQQLQGGLQGYTLNPVFKDNLRTALLGGG
TAWADEGSTLGPDRHARDIDSLDRYALERWEVILQFMVGSPCAVSQDLAQLLVQAGLMRS
EAGEAPYITSAGFQFLLLDTASQLWYFTLQYLKTAQSRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLLTFLQHLREFGLVFQRKRKSRRYYPTRLAITLAAGVTSNSSSSSNLSSTQ
GAGDAGFIVVETNYRVYAYTNSELQIALVALFSEMLYRFPNVVVAQLTRESVQQAIANGI
TAQQIIHFLRTRAHSVMLTQTPVLPPTITDQIRLWELERDRLQFTEGVLYNQFLSQVDFE
VLRDRAQGLGCLVWQDVAHRVMVVTPEGHSEVKRFWKRQRSHT
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagctgcgggtccaactgcagtgtaaaaacctgcatgagtacctgagagagctg
agccccgacgtgctggaccggctctacaaccacccggcaacatgtctggctgtcttcaga
gaactcccctcgttggccaagaactatgtgatgcggatgctgttcctggaccagcctctg
ccccaggctgctgtggctctgtgggtgagaaaggacagccagagggatcacgacgagtgc
gtctccgtgctgacggggctccgtctttggcacagtcagcagctgcaaggcggcctgcag
gggtacaccctaaacccggtgttcaaagacaacctgagaacagctctgctgggagggggc
acggcgtgggcggacgaagggagcacgctgggtcccgatcggcacgcgcgggacatcgac
agccttgaccgctacgccctggagcgatgggaggtgatcctgcagttcatggtgggctcg
ccgtgcgccgtcagccaggacctggctcagctgttggtccaggcgggcctcatgaggagc
gaggccggagaggcgccttacatcacgtcagccggtttccagttcctcctgctggacacg
gcctctcagctgtggtacttcaccctgcagtacctcaaaaccgctcagtccagagggatg
gacctggtggagatcctgtcgttcttgttccagctcagtttctctactctgggcagagat
tactccgtggagggcatgagtgagtcactgctcaccttcctgcagcacctgcgggagttc
gggctggtctttcagaggaagaggaagtcccggcggtactacccaaccagactggcgatc
acgctggctgctggagtcaccagcaactcctcctcctcctccaacctttcttccactcag
ggagctggagatgcgggcttcattgttgtggaaaccaattatcgtgtctacgcctacaca
aattcagaacttcagattgctctggtggctcttttcagcgaaatgctctatcgctttccc
aatgtagtggtggctcagctgacaagagagtcggttcaacaagccattgctaacggaatc
actgcacagcagatcatccactttctgaggaccagagctcactctgtaatgctgacacag
accccagtgctgcctccaaccataacggatcagatcagactgtgggagctggagcgagat
cggctgcagttcacggagggagtgctctacaaccagttcctgtcccaggtggacttcgag
gtgctgcgagacagagctcagggtttgggctgtctggtgtggcaggatgtggctcacaga
gtgatggtggtgacaccggaaggacacagcgaggtcaagaggttctggaaacgacagagg
tctcacacgtaa
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