Komagataeibacter nataicola: B0W47_02300
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Entry
B0W47_02300 CDS
T04737
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kna
Komagataeibacter nataicola
Pathway
kna03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B0W47_02300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kna03400
]
B0W47_02300
Enzymes [BR:
kna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B0W47_02300
DNA repair and recombination proteins [BR:
kna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B0W47_02300
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_16
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AQU86476
UniProt:
A0A9N7CWW2
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All DBs
Position
461631..465113
Genome browser
AA seq
1160 aa
AA seq
DB search
MNDTAGFSLAPGAPVPVWGVPDGYDAFLLARRLGENEGPVLHVCRDDASMARIADQLAFV
APKAEILRFPGWDCLPYDRVSPNPAIIAERVATLTRLLEKATTPRIVLTTVMGAIQRVAP
RAAFSGQSITIKTGESLDAPFLMELLIAHGYNRTDTVMEQGEFATRGGIFDIFPAGEAEP
VRLDLFGDEVENIRRFDPGTQRSTAKIDSLTMRPVADFSLDPASISRFRTGWRDLFGPAA
ANDPLYQHVSDGRRHAGMEHWLPLFHEHMETLVDYLPGVTISLANQAGEVLATRLEMIAD
HYDARKQPTREGEVPYRPLPPHLMYLDRKGWDAMIAGKKAVVFMPFAQPDGAPGMDAGGR
PGQMFAKTVTEGRENVFPMLHARVEEWAQTGRRAYVTAWTRGSCERIGVLLREYRLPVQT
FATWKEAQKLKPGTVGLLTLGLERGFVADNFAFISEQDLLGERISRPPRRRKKADQFISE
ASEIAEGDLIVHQDYGIGRYDGLETIGVGTAPHDCLRLIYDGNEKLFLPVENIELLSRFG
SDQAHVALDRLGGVSWQSRKAKMKQRIRDMAGELIRTAAARALREAPALTPEEGLWDEFC
ARFPFIETEDQSRAIADVLDDMASGKPMDRLVCGDVGFGKTEVALRAAFVAAMSGAQVAV
VVPTTLLARQHYRTFSARFAGLPVNVAQLSRMVTGKEASAVRKGLADGTVNIVIGTHALL
AKTVRFADLGLLIVDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREMS
LIATPPTDRLAVRTFIMPFDSVVIREAIQRERFRGGQVFCVVPRIEDLDRIAARLHEIVP
DARLVQAHGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLG
QLYQLRGRVGRGKQRGYAYLTWPQTHVLSAAAQKRLEVMQTLDTLGAGFTLASHDLDLRG
AGNLLGDEQSGHIREVGIELYQQMLEDAVADLRTEKGRRKLQDRDWTPNIILGLPVLIPD
SYVTDLPVRLGLYRRIAALANDAEVEAMEAELVDRFGTLPDEVRNLLDVVTLKRLCREAG
VERLEAGPKGMVIQFRGNTFANPAGLVAWIARQKEANVRLRPDHKLAIIREMTNAQRITQ
ARKVLGALVRMVHDEAGVPA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatacggcaggtttctcgctcgcacccggcgcccccgttcccgtatggggcgtg
ccggatgggtatgacgccttcctgctcgcccgccgcctgggcgagaacgaaggccccgtg
ctgcatgtgtgccgtgatgatgcctccatggcgcgcattgcggaccagctggcctttgtc
gcaccgaaggcggaaatcctccgctttccgggctgggactgcctgccgtatgaccgtgtc
tcccccaaccccgccatcatcgcggagcgggtggcgacactgacccgactgctggaaaag
gcaaccacgccccgcatcgtgctgaccacggtcatgggcgccatccagcgcgtggccccg
cgcgcggccttttccgggcagtcgatcaccataaagaccggcgaaagccttgacgcaccg
ttcctgatggaactgctcatcgcccacggctacaaccgcaccgacacggtgatggaacag
ggcgagttcgccacccgtggcggtatttttgatattttccccgcgggcgaggccgaaccc
gtgcgcctcgacctgtttggcgacgaggtggagaacatccgccgcttcgaccccggcacc
cagcgctcgacagcgaagatcgacagcctgaccatgcgcccggtggccgatttcagcctc
gatcccgcctccatctcgcgctttcgcaccggctggcgcgacctgtttggccctgctgcc
gccaatgacccgctctaccagcacgtatcggatggcaggcggcacgcgggcatggagcac
tggctgcccctgttccatgaacacatggaaacactggtggactacctgcctggtgtcacc
atctcgctggccaatcaggccggagaggtactggccacccggctggaaatgatcgcggat
cattacgacgcccgcaagcagcccacgcgtgagggagaagtaccctaccgcccgctgccg
ccgcacctgatgtatctcgaccgcaaggggtgggatgcgatgatcgcgggcaagaaggcc
gtcgtgttcatgcccttcgcccagcccgatggcgcgccgggcatggatgcaggcggcagg
ccgggccagatgttcgccaagaccgtgaccgaagggcgcgagaacgtcttccccatgctg
catgcacgcgttgaggaatgggcgcagaccggcaggcgggcctatgtcacggcctggacg
cgcggctcatgcgagcgcattggcgtgctgctgcgcgaataccgcctgccggtacagact
ttcgccacatggaaagaggcgcagaagctcaagcccggcacggtggggctgctgacactg
gggctggagcgcggatttgttgccgataacttcgccttcatatccgagcaggacctgctc
ggcgagcggatctcgcgcccgccccggcggcgcaagaaggcggatcagttcatctccgaa
gcctccgaaatcgcggaaggcgacctgatcgttcatcaggattacggcattggccgttat
gacgggctggagaccatcggcgtgggcaccgcgcctcatgactgcctgcgcctgatctat
gatggcaacgagaagctgttcctgccggtcgagaacatcgaactgctcagccgctttggc
tccgaccaggcgcatgtggcgctcgacaggcttggtggcgtgtcgtggcagtcgcgcaag
gcgaagatgaagcagcgcatccgcgacatggcgggcgagctcatccgcactgccgccgcg
cgcgccctgcgtgaagccccggcgcttacgccagaagaggggctgtgggatgaattctgc
gcccgcttcccctttatcgagacagaggaccagtcccgcgccattgccgatgtgctcgat
gacatggcatcaggcaagccgatggaccggctcgtgtgtggcgacgtgggctttggcaag
accgaggtggccctgcgtgccgccttcgttgccgccatgtcgggcgctcaggtggcggtg
gtcgtgcccaccacgctgctggcccgccagcattaccgcacgttctccgcccgctttgcc
gggctgccggtcaatgtggcgcagctttcgcgcatggttacgggcaaggaggccagcgcc
gtgcgcaaggggctggccgatggcacggtcaatatcgtgatcggcacccatgccctgctg
gccaaaacggtcaggttcgctgaccttggcctgctgatcgtggatgaggagcagcatttt
ggcgtggcccacaaggaaaagctcaaggccctgcgcgaggacgtgcatgtgctcacgctt
tctgcaacaccactgccgcgcacgctgcaactcgccctgaccggcgtgcgcgagatgagc
ctgatcgcaacacctccgaccgaccggctggcggtgcgcaccttcatcatgccattcgac
agcgtggtcatccgcgaggccatccagcgcgagcgcttccgtggcggacaggtgttctgc
gtggtgccgcgcatcgaggatctcgaccgcatagccgcccgcctgcacgagatcgtgccc
gacgcaaggctggtgcaggcccatggtcgcctgacgccaaccgagctggaacgggtgatg
accgagttcagcgatggcaaatatgacatcctgctctccaccaacattgtggaaagcggg
ctggacatgcctgcggtcaacacgctcatcatccaccgcgccgacatgtttggcctcggc
cagctttaccagctgcgcgggcgcgtgggccgtggcaagcagcgtggctatgcctacctg
acctggccgcagacacatgtgctctcggccgcagcgcagaagcggctggaagtcatgcag
acgctggacacgctgggcgcaggcttcacgctggcctcgcacgacctcgacctgcgcgga
gcgggcaacctgctgggtgatgagcagtcggggcatatccgcgaagtcggcatcgagctg
taccagcagatgcttgaagacgccgtggccgacctgcgcaccgaaaaggggcggcgcaaa
ctgcaggaccgggactggacgcccaacatcatccttgggctgccggtgctcatacccgac
agctacgtgaccgacctgccggtgcgccttggcctgtaccgccgcattgcagccctggcc
aatgatgccgaggtcgaggccatggaagccgaactggttgaccgcttcggcacgctgccc
gatgaggttcgcaacctgcttgatgtcgtgacgctcaagcgcctgtgccgcgaggccggg
gtggaacggctcgaagctggccccaagggcatggtcatccagttccggggcaacaccttc
gccaacccggcggggctggtggcatggattgcaaggcagaaggaagccaatgtacgcctg
cggcctgaccacaagcttgcgatcatacgcgaaatgaccaacgcccagcgcattacgcag
gcccgcaaggtgctcggcgcgctggtgcggatggtgcatgacgaagcaggcgttccggcg
tga
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