Kosmotoga olearia: Kole_2155
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Entry
Kole_2155 CDS
T00914
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kol
Kosmotoga olearia
Pathway
kol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Kole_2155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kol03400
]
Kole_2155
Enzymes [BR:
kol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Kole_2155
DNA repair and recombination proteins [BR:
kol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Kole_2155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_16
SecA_DEAD
AAA_22
HEM4
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACR80832
UniProt:
C5CIP9
LinkDB
All DBs
Position
2285275..2288331
Genome browser
AA seq
1018 aa
AA seq
DB search
MNEKELIITKDPFLWVIENLERIPESSVIIFPSERELQRFLSFHSPSGDEGIFFSHDVFP
FEDVRVSAYVRNHRMSCLSNLQNKNIKRIYTSLDAILRKTLPPEAMKGSTKKIRIDDPFG
FHPDKLVEMGYERVFTVVEPGQFSWKGEVVDIFVPGSVLPYRLILFDDIVEEIKLFDPGN
QRSVKHISEIEIFPAGEVLTIEENVSLAKLRIENAEKATGKRFSISPLNWQRMDTVVGLF
YRQQAWLGDYLGDDCFFLFVDPEEGLKDFELRERETLEILSNKEVEKFIYRRFGTFSPTL
LYSVKKYGLISKREVETFEWTSLKYEDVKATRKNLPRKQEKYVPKAPVFDWSELEEGDFV
VHIEYGIGKFLGIRKINGVLGTREYLTIEYREGSKIYVPIERLDRVHKYVGDTDNIQLNS
LRGNAWKKRKKRVEKEVKERIKELALLYGTREHLRGLSLKGDPTLEDAFKRSFPHLETED
QAKAIEEVLDDLADEKPMDRLVSGDAGYGKTEVALRAAFRAVVSGKQVSILVPTTVLARQ
HYETFKNRLEPFGVNVDILDRYRTPKERQKILRELKNGKIDVIIGTHSLLSKDVRFADLG
LVIIDEEQLFGVMQKEHLKKLRLEVNVLTMSATPIPRTLYMALSGLRELSMIATPPIGRT
MPETYVGPVNDRLIRTAVLREINRGGQVIYVHNRVNELNKLENKIRTLLPEVEIGVAHGQ
MPKRLFEKNVGDFYSGKLQMLLCTTIIESGVDIPNANTLIVDDSQRYGLAQLYQLRGRVG
RSTRRAFAYFLYNPKRLTPKAKERLKALREFSGPGSGMKLAIKDMEIRGFGELLGKEQHG
NISSIGLYLYKEMVERAVAEARGIKELEPLEEKFIDTELHNIPYDMVIPEEYINDSFERM
KIYRRIAMSRSVEEITEIEEELKDRFGTLPDEVRSLLDAARIRIAAYNLSIKFIEYDPHS
EAVIIGLKESGKKNVKIFDGLRNIFNEKESKVILYNIKEEKLLDTIKAIFLGDDKDDS
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
ttgaatgagaaagaactgataataacaaaggatccatttctctgggtaatcgaaaatctc
gaaagaatccccgaaagttctgtaatcattttcccttcggaaagggaattgcaaagattc
ctatcctttcattcaccatcaggagatgaagggattttcttttcacatgatgtttttccc
tttgaagacgtcagggtttccgcatatgtgagaaatcatcgtatgagctgcttgagcaac
cttcagaataaaaacatcaaaaggatctacaccagtctggatgcgattctgaggaaaacg
cttcctcctgaagcaatgaaaggaagtacgaaaaagattagaattgacgatccttttgga
tttcatccagacaaactcgtcgagatgggttacgaaagggtttttaccgttgttgaaccc
gggcagttttcctggaaaggcgaagtcgttgatatttttgttccaggcagcgttttaccg
tatagattgattctcttcgatgacatagtcgaggagataaagctttttgacccgggaaac
caaagaagcgtaaaacacattagtgaaattgagatctttccagctggtgaagtacttaca
attgaagaaaacgtctctttggcaaaactcagaatagaaaacgcggaaaaagctaccgga
aaaaggttttccatcagccctctcaactggcaaaggatggatacagtggtggggcttttt
tacaggcagcaggcctggctgggagattatcttggcgatgactgctttttcctttttgta
gatcccgaagaaggactgaaagactttgaactcagggaaagagaaaccctagaaattctc
tcgaacaaagaagtcgaaaaattcatatataggaggttcggaaccttttcacctactctg
ctgtattcggtgaaaaagtatggattgatttctaagagagaggttgagactttcgagtgg
acatctttaaagtacgaagatgttaaagcaaccaggaaaaatctgccgagaaaacaagaa
aaatacgttcccaaggcccctgtttttgactggagcgagcttgaagaaggtgattttgtc
gttcatattgagtacggcattggaaagtttcttggaataagaaagattaacggcgttctg
ggaacccgggaatacctcactattgaatatcgcgaaggttcgaagatttacgttccgata
gaacgcctcgaccgtgtccataagtatgttggggatacggataatatacagttgaattca
ttaagagggaacgcctggaagaaacgaaagaaacgggttgagaaagaggtaaaggaaagg
ataaaagaactggcgttgctgtacggtacgagggagcatttaaggggattgagcttgaaa
ggagatcccaccctggaggatgcgttcaagagaagttttccccatcttgagacagaagat
caggcaaaggctatagaagaggtactggacgaccttgctgacgaaaaaccaatggacagg
cttgttagcggcgatgcgggttatggcaaaacagaggttgctttgagagcagcttttcga
gcggtggtttcaggaaagcaagtttcgattctcgttccgacgacagttttggcgcgtcag
cattatgaaaccttcaaaaacaggcttgaaccctttggagttaacgtagatatactcgat
agataccgcacaccgaaagaaagacagaagatacttcgtgagttgaagaatggaaaaatc
gacgtaataattggtactcacagcctgctctctaaagacgtgcgtttcgctgatctgggg
ctggtaataatcgatgaagagcagctcttcggggtaatgcagaaggaacatttgaagaaa
ctcaggcttgaggtcaacgttttgaccatgagtgccacaccaattcccagaacactttac
atggcactttcagggctcagagaactttccatgatcgcgactccacccattgggagaacc
atgccggaaacgtatgtcggtcccgtcaacgacaggttgatcagaacggctgttttgaga
gagatcaatcgtgggggtcaggttatatacgtccataacagggtaaacgagctcaacaaa
ctcgaaaataagatcagaacattgcttcctgaggttgaaattggagtggcgcatggccag
atgcccaaaaggcttttcgaaaaaaatgtgggtgatttctactctggcaagcttcagatg
ctgttatgcacaaccatcatagaaagcggtgttgacattcccaatgcgaacacccttata
gttgatgattctcagagatatgggctggctcaactttatcaattgagaggaagggtaggc
agaagcaccagaagagcatttgcgtactttttgtacaatcctaaacgtctgacgccaaaa
gcaaaagaacgtttgaaggctttgagggaattttccggaccagggagcggaatgaaactc
gccataaaggatatggaaataaggggattcggagaattacttggcaaagaacagcacgga
aatatttcctccatcgggttgtacctgtacaaagagatggtggagagagctgtagctgaa
gccagaggcataaaggaactcgaaccactggaagaaaaattcatagataccgaattgcac
aatataccctatgatatggtaatccctgaggaatacatcaacgattcttttgaaaggatg
aagatttataggcggatagcaatgagcaggtccgttgaagagatcacagaaatcgaggaa
gaattgaaggataggtttggcactttacccgatgaagtaagatctcttctcgatgctgcg
agaataagaatagccgcttataacctatcaataaagttcatagaatacgacccgcattct
gaagcggttattatcggattgaaggaaagcgggaagaaaaatgtaaagatattcgatggt
ttaagaaacattttcaacgagaaggagtcaaaggttatcctgtacaatatcaaggaagaa
aaactccttgatacaataaaagctatctttcttggagatgataaagatgattcatga
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