Kovacikia minuta: K9N68_05215
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Entry
K9N68_05215 CDS
T07518
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kov
Kovacikia minuta
Pathway
kov03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K9N68_05215 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kov03400
]
K9N68_05215 (mfd)
Enzymes [BR:
kov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K9N68_05215 (mfd)
DNA repair and recombination proteins [BR:
kov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K9N68_05215 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UBF27360
LinkDB
All DBs
Position
1121883..1125662
Genome browser
AA seq
1259 aa
AA seq
DB search
MALSSITRALGRSPLTSELLNNLTKHQHLRLNGLARLPKGLVSSALAQAQSRPLLVVAAT
LEEAGRWTAQLETMGWQTVHFYPTSEASPYEPFDPESEMVWGQLQVLADLVREAEGRGQR
AEGRREEPGARSQESGEEDREKGGQGDKGNLIQNSKFKIQNSSPTPLAIVTTERALQPHL
PPLEALKPYCLTLNRGTELDLETLARELARLGYERVPLVETEGQWSRRGDIVDVFPVASE
LPVRLELFGDELDQIREFDPSTQRSLDRVDQIVLTPTDFGPIVRATLSAAKLAQVKAYLS
PEEQEKFDEGQVLEGSRRFLGIAFDQPASLLDYLPENTLIAIDEPDQCQAHGDRWVEHVE
EHWREVGSGEWGVGSGESEVEGKGSALPKIHRSFSESLAEVECFDRLYLSELAEEIIRSQ
EPEGRGQKAEDSPQSLASTQNSKLKTQNSSPTPINLASRPVPAIPHQFGRLAETLRQERD
RNFSIWLVSAQPSRSVALLQEHDCPAQFIPNPRDYLAIDKLQVQHVPVALKYSGLAELEG
FILPTFRLVVVTDREFFGQHTLATPSYVRKRRRAASKQVDPNKLQPGDYVVHRSHGIGRF
LKLESLTLNHETREYLVIQYADGLLRVSADQLNALSRFRGGGETAPELNKMSSKAWERTK
SKVRKAIKKVAVDLLQLYAQRTHQQGFTYPADMPWQEEMEDSFPYQPTPDQLKAVQDVKQ
DMQSDRPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVALLAPTTILTQQHYHTLKERFA
PYPIQVGLLNRFRTPEERRNILQRLATGELDVVVGTHQLLGKGVQFKDLGLLVVDEEQRF
GVNQKEKIKSLRTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLAPYD
PEMVRAAIRQELDRGGQVFYVVPRVEGIEEVAGKIREMVPGVRLAIAHGQMPEAELENTM
LTFSEGEADVLVCTTIIESGLDIPRVNTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWL
FYPKSGANGRAALTDAARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMDA
IGFDLYVEMLEEAIREIRGQEIPQVDDAQIDLNLTAFIPADYIPDLDQKMSAYRAVASAS
SKQELAQIAADWSDRYGPIPVAASQLIRVVELKQIAKKLGFSRIKPEGNQHITLETPMEE
PAWSLLKANLPEHLHSRFIYTPGKVTVRGLGILNADQQLENLLNWLSKMQGALPEMAIV
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggcgctttcttccatcacccgtgccctggggcgatcgcccctgacctcggaactgtta
aataacctgacaaagcatcaacatctacggttgaacggtttggcgcggctacccaaggga
ttggtcagttcagccctggcccaggcacaatcccgccctttgttggtggttgccgccacc
ctggaagaagcgggacgctggactgcccaactcgaaacaatgggttggcaaaccgttcat
ttttaccccacctccgaagcctctccctatgaaccctttgatcccgaatccgagatggtt
tggggtcagttgcaggtgctggcagatctggtgagagaggcagaaggtagagggcagagg
gcagaagggagaagggaggagccaggagccaggagccaggagtcaggagaggaggacagg
gagaaagggggacaaggggacaaggggaatttaattcaaaactcaaaattcaaaattcaa
aattcttcccccacacccctcgcgatcgttaccaccgaacgtgccctccagccccatttg
cccccgctggaagcactaaaaccctattgcctgacgttaaatcgaggcacagaactggat
ctggaaacgctggcaagggagttggctcggttgggttacgaacgggtgcccctggtggaa
accgaggggcagtggagccgtcggggtgacattgtggatgtgtttccagtggcatcggaa
ctgccggttcggctggagttgtttggggatgagctagaccagattcgagagttcgaccct
tccacccagcgatcgctggatcgggttgaccagattgtgttgacgccgaccgattttggt
cccattgtgcgggcgactttaagcgccgcgaaacttgcccaggtgaaagcctacctttcc
cctgaagagcaggagaagtttgacgaagggcaagttttggaaggatctcgccgtttcctg
gggattgcctttgaccaacccgcctccctgctagactatctaccggaaaataccctgatc
gcgatcgacgaaccggatcaatgtcaggcccacggcgatcgctgggtggagcatgtggaa
gaacactggcgcgaggtggggagtggggagtggggagtggggagtggggagtcggaagtt
gagggaaaagggtctgcattacccaaaatccatcgatcgtttagtgaatctctggcggag
gtagagtgcttcgatcgcctctacttatcagaactggcagaagagattatcaggagccag
gagccagagggcagagggcaaaaggcagaagacagtcctcagtccttagcttcaactcaa
aactcaaaactcaaaactcaaaactcctcccccactcccattaacctggcgagtcgtccg
gttccagcaattccccaccagtttgggcgattagcggaaaccctgcgacaggaacgcgat
cgcaacttctcgatctggctggtttctgcccaaccgtcccgttcggtggcgttgcttcag
gaacacgactgtccggctcagttcattcccaatccgagggactatctggcgatcgacaag
ctccaggtgcagcatgttcccgttgccctgaaatactccgggttggcagagttggaaggg
tttattttgccaaccttccgcctggtggtggtgaccgatcgggagttttttgggcagcat
accctggcaactcccagctatgttcgcaaacgtcgccgggctgcgtctaaacaggttgac
cccaacaagttgcaaccgggagattatgtggttcaccgcagccacggcattggacggttt
ctgaagctggaaagtttgacgctcaaccatgaaacccgcgagtatctggtgatccagtac
gccgatgggttactgcgtgtgtctgccgatcagctcaacgccctgtcgcgttttcgggga
ggtggggaaaccgcgcctgagctaaacaaaatgtccagtaaagcctgggagcgcaccaag
agcaaagttcgcaaggcaatcaaaaaagtagcggtcgatttgcttcagctttatgctcaa
cgtacccatcaacagggatttacctatccggctgatatgccctggcaggaagagatggag
gattctttcccctaccagccaacccccgatcagttaaaagcggtacaggacgtgaagcag
gatatgcaaagcgatcgcccgatggatcggcttgtttgtggtgatgtaggatttgggaag
accgaagtagcaattcgcgccattttcaaagcgattacggctgggaaacaggttgccctg
ctggctcccaccaccatcctgacccagcaacactaccacaccctaaaagagcgatttgcg
ccttacccgattcaggtaggtttgctgaatcgtttccgcactcccgaagaacgccgcaac
atcctgcaacggttggctaccggcgaactggatgtggttgttggcacccaccaattgctg
ggcaaaggtgtccaattcaaagatttgggcttactggtggtggatgaggaacagcggttt
ggcgtgaaccagaaggaaaagatcaaatccctccggactcaagtggatgttttgaccctg
agtgccaccccgattccccgtaccctctatatggcgctctccggggtgcgggagatgagc
ctgatcacgacaccgccgccctcccgtcgcccaatcaaaacccatttagcgccctacgac
ccggagatggtgcgggcagccatccgtcaggagctagatcggggtgggcaggtcttctat
gtggtgcccagagtagaagggattgaagaggtcgcaggcaaaattcgggaaatggtgccg
ggagtacggttagcgatcgcccacggtcagatgccagaagcagagttggaaaataccatg
ctgacctttagtgaaggcgaggcggatgttctggtttgtaccactatcatcgaatcgggg
ctggatattccccgtgtgaataccattctgattgaagatgcccaccgctttgggttatcg
caactttatcaactgcggggacgggttggacgggcaggaattcaagcccatgcctggttg
ttttatcccaagtctggggcaaacggacgagcagccctgacggatgcggcgcgccagcgg
ttacgggcaattcaggagtttgcccagttaggctctggataccagctggcaatgcgggat
atggaaatccggggggtggggaatcttctgggagccgagcagtctggacagatggacgcg
atcggctttgatctgtatgtggaaatgctggaggaggcaattcgcgaaattcgcgggcag
gaaattccccaggtggacgatgcccaaattgatctgaacctgactgccttcatcccggca
gattacattcccgacctggatcaaaaaatgagtgcctatcgggcggttgcctctgccagt
tcaaaacaggagctagcccaaatcgcagccgattggagcgatcgctatggcccaattccg
gtggctgcttcccaactgatccgggtggtggaattgaagcaaatcgccaagaaacttggt
ttctcccgcatcaaaccggagggcaaccagcatattaccctggaaaccccaatggaggaa
cctgcctggagcttgttgaaggcaaacctgccagaacatctgcactcacgctttatctac
acccccggtaaagtgaccgttcgcggattgggcattttgaacgcggatcaacagctcgaa
aatctgctgaattggctcagcaaaatgcagggcgcactaccggaaatggcgatcgtttaa
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