Kordiimonas sp. SCSIO 12610: KFF44_06805
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Entry
KFF44_06805 CDS
T08324
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
koz
Kordiimonas sp. SCSIO 12610
Pathway
koz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
koz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KFF44_06805 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
koz03400
]
KFF44_06805 (mfd)
Enzymes [BR:
koz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KFF44_06805 (mfd)
DNA repair and recombination proteins [BR:
koz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KFF44_06805 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
Helicase_C
DEAD
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
SecA_DEAD
RecG_dom3_C
AAA_16
UB2H
AAA_22
DUF6866_C
CPT
Motif
Other DBs
NCBI-ProteinID:
UTW56877
LinkDB
All DBs
Position
complement(1505791..1509291)
Genome browser
AA seq
1166 aa
AA seq
DB search
MLFDKLVSEDLPLNVGGVPDGFDATLLGDLAARAFGKGKRPVLHITRDDTRLAAIKTEVA
FFAPEIEIVAFPAWDCLPYDRVSPASDIIAKRMAALSRLSQQKLKKPLLVLTTINASLQR
VPTMESVKSATFQAVPGDEVDMHTLTDFLASNGYNRSSQVMDRGEFAIRGGLIDLYPPDA
REPLRLDFFGDELDTIRRFDPLTQRTTGTAKELHLKPASEFSLGSEGVRRFRTNYVNTFG
PTKGEDPLYEAISEGRKYQGAEHWLPFFHEEMASLFDYLDNPVVTIDHQVDEAASERFKA
ISDYYDARQEAMEIARDHKNINTVAYKPIPANTLYLSELEWQAFGESFNLRKLSPFEHPE
NIDVVSFGARATRDFSPERNNRSLNIYDAVKEHIEALQKDGKRVVFASYSEGAADRLKGV
LEDHGVAPIGISTDWSEIRRANKRLISVTVLPLERGFETDDLVVISEQDILGDRLVRKSR
KRKRADNFLTEANALAPGDLVVHTSHGIGKFEGLETVSVSGASHDCLLVTYQGGDKLYVP
VENIEVLSRFGSEDGGGSLDKLGGVAWQARKAKMKARIREMADQLIKLAAERELREGQRI
TAQEGVFDEFCARFPFTETDDQLRAIGDVINDLSSGRPMDRLVCGDVGFGKTEVALRAAF
LAVMAGHQVAIVAPTTLLARQHFLNFTERFKGLPVRVAQLSRLVSAKEAKATREEMRTGT
LDIIIGTHALLAKGIEFKNLGMLIVDEEQHFGVAHKEKLKELKSNVHVLTLTATPIPRTL
QMAMSGLRDLSIIATPPVDRLAVRTFVLPFDPVVVREALLREHYRGGQSFYVCPRIADLE
GIIEFLKEDVPEVKFIVAHGQMSPKTIEDVMTAFYEGQYDVLLSTTIIESGIDIPRANTM
IVHRADMFGLAQLYQLRGRVGRSKIRAYTYLTTPANRMLNDNADKRLQVLQSLDTLGAGF
TIASHDMDIRGAGNLLGDEQSGHVKEVGVELYQKMLEEAVAEARAGKDEDFGESDWSPQI
NLGATVMIPEKYVPDLTQRMALYRRLADLDTREDVDAFCAELIDRFGPLTPEVKQLAAIM
IIKGHAKRAGIDKLDAGQKGVVLSFKDDKFANPAGLVEFISSTGATAKLRPDHKLVYKAK
MDKIGIRLKTVAAITKKLAYIVSQPK
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgctttttgataaacttgtcagcgaagacctgcccctgaatgttggcggtgttcctgat
ggctttgacgcgaccttgctcggcgatctggcagcgcgtgcgttcggcaagggtaagcga
cccgttctgcatatcacccgcgatgacacgcgcctcgctgccattaaaaccgaggttgct
ttttttgcgcccgagatcgagattgttgcctttccagcatgggactgcctaccctatgac
cgcgttagtcccgcgagcgatattatcgcgaagcgcatggccgcgctatcgcgcctcagc
caacaaaaactgaaaaagccgcttctggttctcaccaccattaacgccagccttcaacgc
gttccaacgatggaaagcgttaagtctgcaaccttccaggccgtccctggtgacgaagtg
gatatgcacaccctaaccgattttctggcctcaaacggctataaccgttccagtcaggtt
atggacaggggcgaatttgcaatacggggtggcctgattgacctttatccacccgacgcg
cgagaacctttgcgcctcgatttctttggcgacgagctggataccattcgccgttttgac
ccccttacgcagcggacaacgggaacagcgaaggaattgcacctgaagcccgcaagcgaa
ttttcgctcggcagcgagggcgtacggcggttccgaacgaattatgtgaacacatttggc
ccaaccaagggcgaagacccgctttatgaagccatatccgagggccggaaatatcagggt
gccgagcattggctaccatttttccacgaggaaatggcgagcctgtttgattatctcgat
aatccagttgtcaccatcgaccatcaggtggatgaagcggcaagcgaacgctttaaagcc
attagcgattattatgatgctcgtcaggaagcaatggaaatcgcgcgagatcataaaaac
atcaatacagtcgcttataaaccaatccctgcaaacacgctttacctgagcgaacttgaa
tggcaggcattcggtgagagttttaatcttagaaaactcagcccctttgaacacccggaa
aatattgatgtcgtgtcgtttggtgcgcgggcaacgcgtgatttttcgcccgaacggaat
aaccgcagcctcaatatctatgacgcggttaaggagcatatcgaagcgcttcaaaaagac
ggtaaacgcgttgtatttgccagctactcggagggtgctgccgatcgcctcaagggcgtt
ttggaagatcacggcgttgcccccatcggcatatcaaccgattggtccgagattaggcgc
gcgaacaaacgcctgattagcgtcacggttctgccgctagagcgcgggtttgaaaccgat
gatcttgttgttatctccgagcaggatattctaggcgaccgtttggtcagaaaatcaagg
aagcgcaagcgcgcagataacttcctgaccgaagcaaacgccctcgcccccggtgacctc
gtggttcacacaagccacggcattggtaagttcgaggggttagagaccgttagcgtatcg
ggcgcatcccatgactgtttgcttgtgacctaccagggcggtgacaagctttatgtccct
gttgagaatatcgaggttctatcgcgcttcggcagcgaagatggtggtggttcgctcgat
aagctaggcggggttgcatggcaggcccgcaaggccaaaatgaaagcccgcatccgcgaa
atggcggaccagttaatcaaactggcggcagaacgggaactgcgtgaaggccagcgtatc
acggcgcaggaaggcgtgtttgacgagttttgcgcccgcttccccttcactgaaaccgat
gatcagctccgcgccattggggatgtgatcaatgacctgtcatcagggcgtccgatggac
cgacttgtttgcggtgatgtaggctttggtaaaaccgaggttgctctgcgcgccgcattc
ctagctgttatggcgggacatcaggttgcaattgtagcaccaaccaccctcctcgcgcgc
cagcattttctgaatttcaccgagcggttcaaggggctacccgttcgcgtggcgcagctt
tcacggttggtgagcgcaaaagaagccaaggcaacgcgcgaagaaatgcgcaccggcacg
cttgatattatcattggtacgcacgcactcctcgctaaagggattgagtttaaaaacctt
ggcatgttgattgtggacgaggaacagcatttcggtgttgcccacaaagagaagctaaaa
gaacttaagtccaacgttcatgtacttaccttaacagcgacaccaattccgcgcacgctt
cagatggcgatgagcggccttcgtgacctctcgataatcgcgacaccgccagtggacagg
ctagcagttcgtaccttcgtattaccgtttgaccctgtcgttgtgcgtgaagcgctgctg
cgcgagcattaccggggcggccaaagcttttatgtatgcccgcgcattgcagacttagag
ggcataatcgagttcctcaaggaagatgtgcctgaggttaagtttatcgtggctcacggg
caaatgtcccccaagacgattgaagatgtcatgacagccttttacgaaggccagtatgat
gttcttctgtcaaccacgatcatcgaatctggtattgatattccgcgcgcaaacaccatg
attgtccaccgcgctgatatgtttggattggcgcaactctatcagctccgcggccgtgtt
gggcgctctaaaatacgggcctatacgtatcttacgacccccgcaaatcgcatgctgaat
gataatgcggacaaacgccttcaggttctgcaatcgctcgacacactcggcgcaggcttc
acaatcgcaagccacgatatggacattaggggcgcagggaacctgcttggtgacgagcaa
tcaggccatgttaaagaggtcggcgttgagctttaccagaaaatgcttgaggaagcggtc
gcggaagcacgggccggtaaggatgaggactttggtgaaagcgattggtcgccgcagatc
aacctcggtgcgaccgttatgataccagaaaaatatgtgcctgacctcacgcagcggatg
gcgctttatcgccgccttgcggaccttgatacccgcgaagacgtagatgccttctgcgct
gaactcattgaccggtttggtcccctaacgccagaggttaaacagttagccgcaattatg
atcatcaaagggcacgcgaaacgcgcgggcattgataaactggatgcagggcagaaggga
gtagtactttccttcaaggatgacaagtttgcgaaccccgctggccttgttgaatttatc
agctcaacgggggcaacagccaaactacggcctgatcataaacttgtctacaaagccaag
atggataaaatcggcatccggttaaaaaccgttgctgctataaccaaaaaattggcgtat
atcgtttcgcaaccaaaataa
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