Kosmotoga pacifica: IX53_10290
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Entry
IX53_10290 CDS
T03949
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kpf
Kosmotoga pacifica
Pathway
kpf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IX53_10290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kpf03400
]
IX53_10290
Enzymes [BR:
kpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IX53_10290
DNA repair and recombination proteins [BR:
kpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IX53_10290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_16
ABATE
baeRF_family10
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AKI98373
UniProt:
A0A0G2ZHX1
LinkDB
All DBs
Position
2152652..2155663
Genome browser
AA seq
1003 aa
AA seq
DB search
MSINAKELKRPTVILLPAEKMLGRLEDVFPEGVTVDIFPSHDVFPFEEIGTSYSVKSARL
GVLRKLIQGQSPIIVTTMHSFLRKTIPPEILGKYLLKFRVGDKFSLSAPLLQSLGYVRVF
TVAEPSQFSIKGGIIDIFVPGDTEPVRIEIFDDVIESIRRFDVITQRSIARLDNFELIPG
SESLTHKKHLELAEKRINHAERQTGKKITFKLESGINLDTVSGMFYESQSILADYLPEGT
QYIFVEPDEAVNEFARLEREVIEMLEEKTAERFLYKRFGGLSVEFFMKLRSYIILAAREP
TFLDWDVVRAEEQKAPLIRKRKSKKVFTPSTPLIDWTELEPGDLVVHKDYGIGRYQGVKT
ITSALGTREYLALEYREGSKLYVPVERVDRVHKYIGGEESVQLNTLKGNHWAKQKKRVEE
EVRRRVKELAALYAARERIRGVVLTGESELEEKLKESFPYLETEDQQKAIEEVLNDLARE
RPMDRLISGDSGFGKTEVAIRATFRTVVSGKQVAVLVPTTVLARQHFESFSSRLSPLGVS
VKLLDRYTTGKEREKLLGGLKKGLIDVVIGTHSLLSNAVKFYDLGLVIIDEEQLFGVMQK
EHFKKLRLKVNVLSMSATPIPRTLYMALSGLRELSVITTPPAGRIAAETYVGPKNEKLIR
TAVLREINRGGQVIYVHNRVQELDELYEFLSGLLPEVTVGVAHGQMGKRKFEKIIGDFYS
GDLDMLLCTTIIESGVDIPNANTLIVDDSQRYGLAQLYQLRGRVGRSNRRAFAYFLYDPK
NLGPQSKERLKALKEFSGPGSGLKLAMRDMEIRGIGTLLGSEQSGNISSVGLYLYHEMLE
RASAEILNKSDEKIDTRETVDTEMRGIYYDMVIPQEYVGDSIERLKIYRRIANARDISEL
KELLDELIDRFGTPTKEVRSLFNAARLRLAAHKKGIKLIEYDRDSETIKLKFKDVKKLDE
LTYGKLRVIFNERESSAFIYSVRPERVMNVLNRILSGDGKYDF
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
ttgagtattaatgcaaaagagttgaaaaggcccacggtgatactccttcctgccgaaaag
atgcttggacgtctggaagatgtctttcctgaaggggttacggtggatatctttccatct
catgatgtttttccttttgaggagataggcacatcatatagcgtaaaaagtgcaaggctc
ggtgttcttagaaagctcatacagggtcagagccccattatagtaacaacgatgcactct
tttcttagaaagactataccacctgaaattctagggaagtatcttttgaaatttcgtgtt
ggtgataaattttctctatccgctcctctactgcaatcactcggttatgtgagggttttt
accgtagcggagccttcacagttctctataaaaggcgggataatagatatcttcgttcct
ggagataccgaacctgtcaggatcgaaatcttcgacgatgtaattgaatcaataagacgg
ttcgatgtgataacacaaaggagtatcgcacgccttgataactttgaattaatacctggt
tctgaatcgttgactcataagaaacatctagaactcgcggagaaacggatcaatcacgcc
gaaaggcagaccggaaaaaagataaccttcaaacttgaaagcggcattaaccttgacaca
gtatccggaatgttctatgaaagtcagagtattcttgccgattatttacctgagggaact
caatacatctttgtggaaccggatgaagccgttaatgaattcgcaagactggaaagggaa
gttatagagatgttggaagaaaaaactgcggagcggttcctgtataaaagatttggtggc
ctttcagttgaatttttcatgaagctccgcagctatatcattcttgccgctcgagaaccc
acatttctcgattgggatgttgttagggcagaggaacagaaagctcctcttatacgaaaa
agaaagagtaaaaaggtattcacaccaagcactcctttgatagactggactgaactcgaa
ccaggtgatctggttgttcacaaagactacgggataggtcgatatcagggggtaaagacc
ataacatcggctctcggaacgagagaatatctggccctagaatacagagagggttcaaag
ctgtatgtaccggtggaacgtgttgatagagtacacaaatatatcggtggggaagaaagt
gttcagctgaacactttgaaaggtaaccactgggcaaaacagaaaaaacgtgtcgaagaa
gaggtaagaaggagagtcaaagaactggctgcactttatgctgcgagggagaggataagg
ggcgtagttctgacaggagaatctgaacttgaagagaagttgaaagagagcttcccgtat
ttagaaaccgaagatcaacaaaaagccattgaagaggtgttaaacgatcttgcccgagaa
cgcccgatggataggcttatcagtggtgactcaggtttcgggaaaacagaagttgcgata
cgggccacttttagaaccgttgtttcaggtaagcaggttgctgttcttgtacccacgacg
gtgttggcacgacagcattttgagagttttagctcacgcctttcacctctgggtgtttcc
gtcaaactcctcgaccgatatacgacaggcaaagaacgcgagaaactccttggaggactt
aagaaaggattgattgatgttgtgataggcacacatagccttctgtcaaatgctgtcaaa
ttttacgaccttggtctggtgataatagatgaggaacagctattcggcgttatgcaaaag
gagcattttaaaaagctacggctgaaggttaacgtcctctccatgagtgctacccctatt
ccccgaacactttacatggccctatcaggactcagagaactctctgtaataacaacacca
cctgcaggtaggatcgcagcagagacttacgtgggtccaaaaaacgaaaagcttatcagg
acggcagttttgagagaaatcaatcggggtgggcaggttatatatgttcataatagggtc
caggaactcgatgaactgtacgagtttttgagtggactgcttccggaggtaaccgttggt
gttgcccatggtcaaatgggaaagaggaagttcgaaaaaattattggtgatttctacagt
ggtgacctcgatatgcttttatgcaccaccataatagagagcggagtcgacattcccaac
gccaatacattaatcgttgatgactcacaaaggtatggacttgctcagttataccagctc
cgtggccgggtaggaagaagcaacaggagggcttttgcctatttcctgtatgaccctaaa
aaccttggaccgcaatccaaagagagattgaaagctctcaaagagttttcaggcccgggt
agcgggttgaagctagctatgagagacatggagatcaggggaataggaactcttctcggt
agtgagcagtccgggaatatctcttctgtggggctgtatctttaccatgaaatgctcgaa
agggcctctgctgaaattttgaataaatccgatgaaaaaatcgatacccgtgaaactgtt
gacactgaaatgagagggatatattatgatatggtaattccacaagagtatgttggggac
tcgatagaacgtctgaaaatatatcggagaatcgccaatgcccgggatattagtgaactg
aaagaactgttagatgaactaattgatcgattcggtaccccaacaaaagaggtgcgttca
ttgtttaatgcagctagattacgactcgccgcacataagaagggcataaagttaatcgaa
tacgatagagattcagaaacaataaagctgaagtttaaagatgttaaaaaacttgatgaa
ctcacttacggtaaattgagagtcattttcaatgaacgcgaatcctccgcgtttatatac
agtgtcagaccggagcgtgttatgaatgttctaaacaggattttgtcgggagatggaaaa
tatgatttttga
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