Pantoea piersonii: N5580_17500
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Entry
N5580_17500 CDS
T08710
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
kpie
Pantoea piersonii
Pathway
kpie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N5580_17500 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpie03019
]
N5580_17500 (rhlB)
Enzymes [BR:
kpie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N5580_17500 (rhlB)
Messenger RNA biogenesis [BR:
kpie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N5580_17500 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
WBG90835
LinkDB
All DBs
Position
3685959..3687251
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AA seq
430 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPLVVEALDKKGFHHCTPIQALALPFTLSGRDVAGQAQTGTGKT
MAFLTSTFHHLLSHPAQEGRQINQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYG
GDGYDKQLKVLADGVDILVGTTGRLIDYAKQNHINLGAIQVLVLDEADRMFDLGFIKDIR
WLFRRMPPATQRLSMLFSATLSWRVRELAFEHMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLLEEEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
DFTKGDVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIEEYIGHSIPVSKYNSDALMNDLPPPKRLARTRTGNGPRRGGNNANRRGA
PRNNNRKRSG
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaacagaacagaagttttccgacttcgccctgcaccctctggtc
gtggaagcccttgataaaaaaggctttcatcactgcacgcctattcaggcgttagctctg
ccttttacgctttcagggcgtgatgtcgcaggccaggcgcaaaccggtaccggcaaaacg
atggcgtttctgacgtcaacgtttcatcatcttctctctcaccccgcgcaggaaggccgt
cagatcaatcaaccgcgcgccctgatcatggctccgacgcgtgaactggcagtacaaatc
cacgccgacgccgaaccgctggcgcaggcaaccggtctgaaactgggcctggcttacggc
ggcgacggttacgacaaacagcttaaagtgctggccgacggcgtagatattctggtcggt
acgacaggccgcctcatcgattacgctaaacagaatcacattaacctcggcgcgatccag
gtactggtgctggacgaagccgaccgcatgttcgatctcggctttattaaagatattcgc
tggctgttccgccgcatgccgcctgcaacgcagcgtctgagcatgctcttttccgctacg
ctctcatggcgcgtgcgtgaactggctttcgaacacatgaataacgccgagtacgttgag
gtggagccagagcagaaaacggggcaccgcattaaagaagagctcttctacccgtcgaac
gaagaaaaaatgcgcctgctgcagacgctgctggaagaagagtggccggatcgcgctatc
gtcttcgccaataccaagcatcgctgcgaagatatctggggccatctggcggcggacggc
catcgcgtcggcctgctgaccggtgatgtcgcccagaagaagcgcctgcgcattctggat
gacttcactaaaggcgatgtcgatatcctggttgccaccgacgttgcggcgcgcggtctg
catattcctgcggttacccacgtctttaactacgatctgcctgacgatcgcgaagactac
gttcaccgtatcggccgtaccggccgcgcgggcgcaagcggacattcgatcagcctggcc
tgtgaagagtacgcactgaacctgccggcgattgaagagtatatcggccacagcattccg
gtgagcaagtacaacagcgatgcgctgatgaacgatctaccgccgccgaagcgcctggca
cgtacccgcaccggcaatggtccgcgtcgcggcggcaacaacgcgaatcgccgtggagcg
ccgcgtaataacaaccgtaaacgttcaggttaa
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