Kocuria palustris: KPaMU14_09185
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Entry
KPaMU14_09185 CDS
T04045
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kpl
Kocuria palustris
Pathway
kpl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KPaMU14_09185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kpl03400
]
KPaMU14_09185
Enzymes [BR:
kpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KPaMU14_09185
DNA repair and recombination proteins [BR:
kpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KPaMU14_09185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALB03608
LinkDB
All DBs
Position
complement(2097514..2101257)
Genome browser
AA seq
1247 aa
AA seq
DB search
MSLTGLADILAQEPSLATVRAQAGVRPAERSAETVISVADGMRPVLISQLLAGLRSAPAS
DGQQPVLLVVTATGREAEELEQQLPAWAPQAQVASLPAWETLPHERLSPRSDTVGQRLDV
MRRLAHPEQGALDVVVAPVRAVLQPVVEGMGDLQPVILERGAEQSFDDTVRALAAAAYSR
TDMVSRRGEFAVRGGILDVFPPTADHPVRVEFFGDEIEELRWFAVADQRTLRSGEHPQRI
VAPPCRELLITPAVQSRAARLKDRLPGAEAILERIAGGIYSEGMESLAPLLADRMVPVLS
LLPAGSIVVVQEPEKVRARAEDLVATNEEFLAAAWESAADTDQAPLDVAQAQSLEDDGRT
LASGSFHTLAQSRETALETGLGWWSTTALTVGAQLSEVDADTDEALVRLMDTDADTLTVS
GRAPRRFGGDVEALLEHLGSLVREGWRVVAVTEGPGPLQRLAELMGSAEIPAARHESLEV
EPTAGVVELTTAGVSTGFVLDDQRVALLSEADVLGRSSSYAAKTKTALPQRRRRNAVDPL
ALQPGDYVVHEQHGVGQFIELIARPIAGAVTKPGQPKPQREYLVLEYAPSKRNGPKDRLF
VPTDQLDQISTYQGGEAPVLSKMGGSDWNAKKRAAKRAVKDIAAELIRLYSARMATRGHA
FGPDTPWQRELEEAFPYIETPDQLTTIDEVKADMEKEVPMDRLISGDVGYGKTEVAVRAA
FKAIQDGKQVAVLVPTTLLGQQHVETFSQRYSGFPVRVAGLSRFQTAKESKEILAGLRDG
SVDLVVGTHRLLSKEVQFKDLGLIIVDEEQRFGVEHKEKLKAMRTDVDVLSMSATPIPRT
LEMSLTGIRETSTLATPPEERHPVLTYVGAYTDRQVTAAIRRELMREGQVFFVHNRVSSI
TRRASEIAQLVPEARVAVAHGQMSETELEQIILDFYEKRFDVLVSTTIVETGLDIANANT
LIVDGADKYGLSQLHQLRGRVGRGRERAYAYFLYDVEKPLTETALERLKAVAAHNELGAG
LQLAQKDLEIRGAGNLLGGEQSGHIQGVGFDMYLRLVGEAVSEFRGDEDTAPTEMKIELP
VNAHLPHDYVPGERLRLDAYRTLAQASDVDGIREVEAELQDRFGELPEPARLLLEVARLR
VMARSVGLSDIAVQGPSIRFAPADLPESKQMRLQRMHPGSKIVPVPGADASGARQVLIPK
PKTARVGGKDLTDAAVIDWARQVLVSIFEAQEPQASSSTAQAQSGSQ
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcaccggcctcgccgacatcctcgcccaggagccctcgctggccacagtccgc
gcccaggcgggcgtgcgccctgcggagcgctccgccgagaccgtgatcagcgtggccgat
ggcatgcgcccggtgctgatcagccagctgctggcgggtctgcgcagcgccccggcctcc
gacgggcagcagccggtgctgctcgtggtcaccgccacgggccgggaggccgaggagctc
gagcagcagctgccggcctgggccccgcaggctcaggtcgcctcgcttccggcctgggag
acgctgccgcacgagcggctctcgccgcgctcggacaccgtgggccagcgcctggacgtc
atgcgccggctggctcacccggagcagggggcgctggatgtcgtcgtggctccggtgcgc
gcggtgctgcagccggtcgtggagggcatgggggacctgcagccggtgatcctcgagcgc
ggggccgagcagtccttcgacgacaccgtccgggccctcgccgctgccgcctactcccgc
acggacatggtctcccgccgcggcgagttcgccgtgcgcggagggatcctcgacgtcttc
ccgcccaccgccgatcatccggtgcgcgtcgagttcttcggcgatgagatcgaggagctg
cgctggttcgcggtggccgatcagcgcaccctgcgcagcggcgagcacccgcagcgcatc
gtggctccgccgtgccgcgagctgctgatcacccctgcggtgcagtcgcgcgccgcccgg
ctgaaggaccgcctgcccggtgcggaggccatcctggagcgcatcgccggcggcatctac
tcggagggcatggagtcgctggccccgctgctggccgatcgcatggtgcccgtgctctcg
ctgctgccggccgggtcgatcgtggtggtgcaggagccggagaaggtccgtgcccgcgcc
gaggacctggtggccacgaacgaggagttcctggccgcggcctgggagtccgcggcggac
accgaccaggcgccgctggacgtggcccaggcccagtccctggaggacgacgggcgcact
ctggcctccgggtccttccacacgctggcccagtcccgggagaccgctctggagaccggc
ctgggctggtggtccacgaccgcactgaccgtgggtgcgcagctctcggaggtcgacgcc
gacaccgacgaggcgctcgtgcggctgatggacaccgacgccgacaccctgaccgtctcg
gggcgggcgccgcggcgcttcggcggcgatgtggaggcgctgctggagcacctgggctcg
ctcgtgcgcgagggctggcgcgtggtggccgtgaccgaggggccgggtccgctgcagcgc
ctggcggagctgatgggcagcgcggagatccccgccgctcgccacgagtccctggaggtc
gagcccaccgccggcgtcgtcgagctgaccacagccggggtgtccacgggcttcgtgctc
gacgaccagcgcgtggcgctgctcagcgaggccgacgtcctggggcgctcgtcgtcctac
gcggccaagaccaagacggcgctgccgcagcggcgccggcgcaacgcggtggatccgctg
gcgctgcagcccggcgactacgtggtccacgagcagcacggcgtgggtcagttcatcgag
ctgatcgcccgaccgatcgccggtgcggtgaccaagcccgggcagcccaagccgcagcgc
gagtacctggtgctcgagtacgccccgtccaagcgcaatgggcccaaggaccggctgttc
gtgcccacggaccagctggaccagatctcgacctatcagggcggggaggctccggtgctg
tccaagatgggcggctcggactggaatgccaagaagcgcgcggccaagcgggcggtcaag
gacatcgccgccgagctgatccgcctgtactcggcgcgcatggccacgcggggccacgcc
ttcggcccggacaccccgtggcagcgcgagctcgaggaggccttcccctacatcgagacc
cccgatcagctcaccacgatcgacgaggtcaaggccgacatggagaaagaggtccccatg
gaccgcctgatctccggcgacgtcggctacggcaagaccgaggtcgcggtgcgtgcggcc
ttcaaggccatccaggacggcaagcaggtcgcggtgctcgtgccgaccacgctgctgggc
cagcagcacgtcgagacgttctcccagcgctactcgggcttccccgtgcgcgtggcgggc
ctgtcccgcttccagaccgccaaggagtccaaggagatcctggccggtctgcgcgacggc
tccgtggatctcgtggtgggcacccaccgcctgctgagcaaggaggtccagttcaaggac
ctcggcctgatcatcgtggacgaggagcagcgcttcggcgtggagcacaaggagaagctc
aaggccatgcgcacggacgtcgatgtgctgtccatgtccgcgacccccatcccgcgcacg
ctcgagatgtcgctgaccggcatccgcgagacctccacgctggccacgcccccagaggag
cgccaccccgtgctgacgtacgtgggcgcctacacggaccggcaggtcaccgccgcgatc
cgccgcgagctcatgcgcgagggccaggtcttcttcgtgcacaaccgggtctcgtcgatc
acccgccgcgcctcggagatcgcccagctggtcccggaggcccgcgtggcggtggcgcac
gggcagatgtcggagaccgagctcgagcagatcatcctggacttctacgagaagcgcttc
gacgtcctggtctcgaccacgatcgtggagaccggcctggacatcgccaacgccaacacc
ctgatcgtcgacggcgcggacaagtacgggctctcgcagctgcaccagctgcgagggcgc
gtgggccgcggccgcgagcgggcctacgcctacttcctctacgacgtcgagaagccgctg
accgagaccgccctggagcggctcaaggccgtggccgcgcacaacgagctcggcgccggc
ctgcagctggcgcagaaggacctcgagatccgcggtgccggcaacctgctgggcggcgag
cagtccggtcacatccagggcgtgggcttcgacatgtacctgcgcctggtcggcgaggcc
gtctccgagttccgcggcgacgaggacaccgcgcccacggagatgaagatcgagctgccg
gtcaacgcgcacctgccgcacgactacgtcccgggggagcgcctgcgcctggatgcctac
cgcaccctggcccaggcctccgatgtggacggcatccgcgaggtcgaggccgagctgcag
gaccgcttcggcgagcttccggagccggctcggctgctgctcgaggtcgcccgcctgcgt
gtgatggcccgctcggtgggcctgtcggacatcgctgtgcaggggccgagcatccgcttc
gccccggccgatctgcccgagtccaagcagatgcgcctgcagcgcatgcaccccggatcc
aagatcgtgccggttccgggggccgacgcctccggtgcccgtcaggtcctgatccccaag
cccaagacggcgcgcgtcggaggcaaggacctcaccgatgccgccgtgatcgactgggct
cgccaggtgctcgtgtcgatcttcgaggcgcaggagccgcaggcatcgtcgagcacagcg
caggcgcagagcggttcgcagtga
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