KEGG   Kocuria palustris: KPaMU14_11260
Entry
KPaMU14_11260     CDS       T04045                                 
Name
(GenBank) hypothetical protein
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
kpl  Kocuria palustris
Pathway
kpl03030  DNA replication
kpl03430  Mismatch repair
kpl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:kpl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    KPaMU14_11260
   03430 Mismatch repair
    KPaMU14_11260
   03440 Homologous recombination
    KPaMU14_11260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:kpl03032]
    KPaMU14_11260
   03400 DNA repair and recombination proteins [BR:kpl03400]
    KPaMU14_11260
Enzymes [BR:kpl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     KPaMU14_11260
DNA replication proteins [BR:kpl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     KPaMU14_11260
DNA repair and recombination proteins [BR:kpl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     KPaMU14_11260
SSDB
Motif
Pfam: DNA_pol3_delta2 DNA_pol3_gamma3 AAA RuvB_N AAA_22 Rad17 AAA_30 AAA_14 AAA_18 zf-CXXC AAA_5 AAA_19 AAA_2 Mg_chelatase nSTAND3 AAA_28 TsaE
Other DBs
NCBI-ProteinID: ALB03914
LinkDB
Position
2560921..2564526
AA seq 1201 aa
MTTALYRRYRPETFEDVIGQSHVTEPLMTALRKNKVNHAYLFSGPRGCGKTTSARILARC
LNCAQGPTPTPCGQCESCRDLARDGAGSLDVIEMDAASHGGVDDARQLRERATFAPVRDR
YKIFIIDEAHMVTRDGFNALLKIVEEPPEHIKFIFATTEPNKVLPTIRSRTHHYPFRLVP
PEPLMEYLSALCEQEGVGVEPGVQAMVVRAGGGSVRDSLSVLDQLMAGTDQDQISYDLAS
SLLGYTHGALLDDVVDAFASGDAATVFRAVDRVIQTGQDPRRFVEDLLERFRDLVIVDAV
PENAGNILHGTPEDQIARLRNQAHQMGASELSRCADITNEALTEMVGATSPQLHLELLCA
RLLLPSAENTTRGVGVRVDRLERRLNIGRTGAPTGPLVDVPQEQASSGAPQQAPAPQPEP
PRPVQPAAEDTDAHSGSTPAGEHDTASEAPAPAQPEVQESDPLAAAEGGFGKFRGRQPET
RGESSGSSGNSAPAQDGPQSVSQLSGSQQSGPRRAEAQPQAPQQPAGAPDQTPQRPPHAD
ESASRGPASGGEIDMIRSSWTEIISALAEIHRVSWMTTMRGTPIAFDGSVLQLMFDAEGD
RKNFPRFEPNLVQAIQQVIGVTCRVEAVGPGGGTRHDSGGPRGAAPQGSGSSGPGGVGPS
TAGPGGSAPGAPGSAGPRGAGPGGPSSNGPGGPGRPSANAQTESGQQGPEQRGSGRSTPA
QHGGEPRGRPSDDREEAQHDGGRATGPRPFPAQGQRPPQREQPSQRAEPRRQPGSLTPQD
EAPQEEAEQSAPQQDDSAEVTTWAVASIPTSDPVEAAPAGPDGPAQGTEPEVPEAPADPA
PTGAAPTPAGPEESTRQDSASEASQEAASAPPSAQSPEQTRPEPESAPLSTQDARAAWAE
SVEPFSPSQDPQEPSASQPPPAAREQAAPREQAPPHQPAENRDQAAPRRRPQRSAQRRRG
EDPSPDPIVPASPYDDIPWPDEAPPEEEPPFEDPGYRGAPSRAAAGSGAGHGADTDPQHT
SGGPAAQTLAPSVEPGEPTSQQDSARPGSFRTPAQTPGHSAEPVSEPPPQDLPSEEQSPQ
QPPQEDAPPEQWRPSAGARSASAPSGTPAGGAAAPSSGSAAPAAPRKQSFRERHAAHFAA
AERSAEPSRAASSAPDLDSEATFSPSEDDEAVENTDQSTRALIERILGGRLLEEIPHQSG
I
NT seq 3606 nt   +upstreamnt  +downstreamnt
gtgacgaccgccctgtaccgccgctaccgccctgagacgttcgaggacgtcatcggtcag
tcccatgtgaccgagccgctgatgaccgcgctgcgcaagaacaaggtgaaccacgcctac
ctgttctccggtccgagaggctgcggcaagaccacctcggcgcgcatcctggcgcgctgc
ctcaactgcgctcagggccccacgcccacgccctgcgggcagtgcgagtcctgccgcgat
ctggcccgcgacggcgccggctccctggacgtcatcgagatggacgccgcctcccacggc
ggcgtggacgacgcccgccagctgcgcgagcgcgccacgttcgccccggtccgggaccgg
tacaagatcttcatcatcgacgaggcccacatggtcacgcgcgacggcttcaacgcgctg
ctgaagatcgtcgaggagccgccggagcacatcaagttcatcttcgccaccacggagccg
aacaaggtcctgccgaccatccgctcccgcacgcaccactacccgttccgcctggtcccg
cccgagccgctcatggagtacctcagcgccctgtgcgagcaggagggcgtgggcgtggag
cccggcgtgcaggcgatggtggtccgcgccggcggcggctccgtgcgcgactccctctcc
gtgcttgatcagctcatggccggcaccgaccaggatcagatcagctacgacctggccagc
tcgctgctcggctacacccatggggcccttctcgacgacgtcgtcgacgccttcgcctcc
ggcgacgccgccacggtgttccgcgccgtcgaccgcgtgatccagacaggacaggatccg
cggcggttcgtggaggatctgctcgagcgcttccgcgacctcgtgatcgtggacgccgtg
ccggagaacgcgggcaacatcctccacgggaccccggaggaccagatcgcccgcctgcgc
aatcaggcacatcagatgggcgcctcggagctctcgcgctgcgcggacatcaccaacgag
gcgctgaccgagatggtgggggccacctccccgcagttgcacctggagctgctgtgcgcc
cggctgctgctgccctcggcggagaacaccacccgcggagtcggcgtgcgcgtggatcgc
ctcgagcgacgcctgaacatcgggcgcaccggcgctcccaccgggcccctggtggatgtg
ccgcaggagcaggcctcctccggcgccccgcagcaggcaccggctcctcagcccgagccg
ccccggcccgtccagcccgctgccgaggacaccgacgcgcacagcggctccacccccgca
ggggagcatgacactgcctccgaggctcctgccccggcccagcccgaggtgcaggaatcg
gatccgctcgctgcggccgaaggcggcttcgggaagttccgcggtcgccagccggagact
cgcggcgagtcgtccggatcctcggggaactctgcgcccgcgcaggatggcccccagtcg
gtgtcccagctgtcagggtctcagcagtcggggccacggcgcgccgaggcgcagccacag
gctccccagcagcctgccggcgccccggatcagacgcctcagcgtccgccgcacgcggat
gagtccgcctcccgcggccccgccagcggcggcgagatcgacatgatccgcagctcctgg
accgagatcatctcggccctggcggagatccatcgcgtctcgtggatgaccaccatgcgc
ggaacccccatcgccttcgacggctccgtcctgcagctgatgttcgatgccgagggcgac
cgcaagaacttcccgcgcttcgagccgaacctggtccaggcgatccagcaggtcatcggc
gtgacctgccgcgtggaggccgtcggtcccggaggggggacccggcatgactccggcgga
cctcgaggcgcagctccgcaggggtccggctcgagcgggccgggcggcgtcggccccagc
actgccggtccgggcggatccgcccccggcgctccgggctccgccgggccccgcggcgca
ggacccggcggaccgagctcgaacgggcccggtggtccgggccgcccgagcgcgaacgcg
cagaccgagtccgggcagcagggccccgagcagcgcggctcgggacgaagcactccagca
cagcacggcggcgagccgcggggcagacccagcgatgaccgggaggaagcgcagcatgac
gggggccgggcgaccggccctcggccgttccccgcccagggtcagcgaccgccccagcgc
gagcagccgtctcagcgcgctgaaccccgacggcagcccggcagcctgaccccgcaggac
gaggcccctcaggaggaggccgagcagtcggcccctcagcaggacgactccgccgaggtg
acgacctgggctgtggcgtcgatccccacctcggatccggtggaggccgcccctgccgga
cccgatggtcccgcccagggcaccgagcccgaggttcccgaggccccggcagatccggct
cccacgggagctgccccgacaccggccggaccggaggagagcacccgccaggactcggcc
tctgaggcgtcgcaggaggcggcctcagccccgccgtcggcgcagtccccggagcagact
cggccggagcccgagagcgcaccgctgtccacgcaggacgcccgcgccgcgtgggcggaa
tccgtcgagccgttctcgccctcgcaggacccccaggagccgtcagcctcccagccgccg
ccagcggcccgggagcaggcagcaccgcgcgaacaggcccctccccaccagccggccgag
aaccgggaccaggctgcaccccggcggcggccacagaggtcggctcagcgtcggcgcggc
gaggacccgtcgccggatccgatcgtgcccgccagtccgtacgacgacatcccctggccg
gatgaggctccccccgaggaggagccgcccttcgaggaccccggctaccgcggggcaccg
tcgcgcgcggcggccggctccggcgcggggcacggcgcggacacggatccgcagcacacc
tccggcggaccggcagcgcagacgctcgcgccgtccgtcgagccgggcgagccgacctcc
cagcaggactccgcccgccccgggtccttccgcacgccggcacagaccccgggccactcc
gcagagcccgtctcggagccgccgccgcaggaccttccatcggaggagcagtccccgcag
cagccgccccaggaggatgccccgccggagcagtggcgcccctctgcaggagcacgctcg
gcgtccgctccctcgggcaccccagcaggcggagccgcagcgccttcatcgggatcggca
gcgcccgctgcgccgcgcaagcagagcttccgggagcgccacgcggcacatttcgccgcc
gctgagcgcagcgccgagccgagccgggctgcgtcgtcggccccggacctagactcggag
gcgacgttctcgcccagcgaggacgacgaggccgtggagaacacggaccagagcacgcgg
gcgctgatcgagcgcatcctcggcgggcggctgctggaggagatcccgcatcagagcggc
atctga

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