Kribbella qitaiheensis: F1D05_12765
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Entry
F1D05_12765 CDS
T06749
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kqi
Kribbella qitaiheensis
Pathway
kqi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F1D05_12765 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kqi03400
]
F1D05_12765 (mfd)
Enzymes [BR:
kqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F1D05_12765 (mfd)
DNA repair and recombination proteins [BR:
kqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F1D05_12765 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_22
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QNE18620
UniProt:
A0A7G6WXA5
LinkDB
All DBs
Position
complement(2786858..2790481)
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AA seq
1207 aa
AA seq
DB search
MKLAGLVDTLITDPVVAEAVRDARTEGVTTLDLSAPGSIRPVLMAALAAHQGADRPVLAV
TATFREAEELTEALQCMVEPGTVAYYPAWETLPHERLSPRSDTVGRRLAVLRRLAHPDPS
DETTGPIKILVAPVRSVLQPQVAGLADLRPVQLHVGDSVDLEDVAARLSGAAYNRVDLVE
RRGEFAVRGGIIDVFPPTEEHPLRVDFFGDDVEEIRYFAVADQRSLEIAQHGLWAPPCRE
LLLTDEVRSRAAVLAKEHPELSELFEKLAEGHAVEGMESLAPVLVDDMELLVDLMPAGTH
VVVSDPERVRARAHDLVATSQEFLEASWAAAAGGGDAPIDLGAAAYMSLADVRSHALSKG
LAWWSMSPFAAAPTDAPELRDSMGERISLDIDTDAGAVRSRQVAAHEVDPYRGETAAAVE
DVRAWLRDGWRVVCVTEGHGPAQRLAEVFSEAELPARTVEEIDGVPEPGVVLISQGALDR
GFIAEGIKFAVLTENDLAGQRSAAERRSQQRMPSRRKKAVDPLELAPGDYVVHEQHGVGR
YGEMLQRTVGTGSQKATREYIVIEFAPSKRGQPGDRLYVPTDQLDQVTRYVGGEQPTLDK
MGGGDWAKRKGRARKAVRQIAGELIKLYAARQATKGHAFSKDTPWQRELEDAFPFVETPD
QLATIDDVKRDMERVTPMDRIVCGDVGYGKTEIAVRAAFKAVQDGKQVAILVPTTLLVQQ
HYATFAERYAAFPVNVAPLSRFQTDKEAKATIEGLADGSVDVVIGTHRLFSGEVAFKDLG
LVVVDEEQRFGVEHKEQLKQLRTAVDVLTMSATPIPRTLEMSITGIREMSTIATPPEERH
PVLTFVGAYEEGQVTAAIRRELLREGQVFFVHNRVNTIEKAAARIRQLVPEARVSVAHGQ
MPEHQLEQVIQGFWEKESDVIVCTTIVESGIDISNANTLIVERSDLLGLSQLHQLRGRVG
RGRERAYAYFFFPPEKPLTETAHDRLATIAQHADLGAGMQVAMKDLEIRGAGNLLGGEQS
GHIADVGFDLYVRLVGEAVAEYRGDTQADEPEVKIELPIDAHLPHDYVPSQRLRLEMYQR
LAAVRDADGIAELVEELHDRYGDIPQPVLNLIEVAKFRNHARTAGLQDVTLQGNLIRFGP
VDLPDSKVLRLNRLYPKSLVKAQLRTILVPRPATRPVAGQPLRDQELLRWCTRLIDDVIA
EPVGPPA
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
gtgaaactggccggtctggtcgacaccctgatcaccgatccggtggtggcggaggccgtt
cgtgatgcccgtaccgagggcgtcacgacactcgacctgagcgctcccggctcgatccgc
cctgtcctgatggcggcgctcgccgcgcaccagggcgcggacaggccggtgctggcggtc
accgccacgttccgtgaggccgaagagctcaccgaggccctgcagtgcatggtcgagccc
ggcacggtcgcctactacccggcctgggagacgctgccgcacgagcggttgtcgccccga
tcggacacggtcggccgccgcctcgccgtactgcgcaggctcgcgcacccggatccgtcc
gacgagacgaccggcccgatcaagatcctggtcgccccggtgcgatccgtgctccagccg
caggtcgcggggctcgcggaccttcgcccggtgcagttgcatgtcggtgactccgtggac
ctcgaagacgtggccgcgcggctgtccggcgcggcgtacaaccgggtggacctggtcgag
cggcgcggcgagttcgcagtacgcggcgggatcatcgacgttttccctccgaccgaggag
cacccgctgcgggtcgacttcttcggtgacgacgtggaagagatccggtacttcgcggtc
gcggaccagcggtcactggagatcgcccagcacgggctgtgggcacctccgtgtcgcgaa
ctgctgctgaccgacgaggtgcgctcccgcgccgcagtactggccaaggaacaccccgag
ctgtcggagctgttcgagaagctcgccgaaggacacgccgtcgaggggatggagtcgctc
gcgcccgtcctggtcgacgacatggagttgctggtcgatctgatgccggccgggacgcac
gtcgtggtcagcgaccccgagcgggtccgggcccgggcgcacgacctggtcgcgaccagt
caggagttccttgaggcgtcgtgggccgcggctgccggtggtggcgacgcgccgatcgac
ctgggtgccgcggcgtacatgtcgctggcggatgtccgatcgcatgcgttgagcaagggc
ttggcctggtggagcatgtcgccgttcgcggcggcgccgaccgacgcacccgagctgcgc
gactcgatgggggagcggatctccctcgacatcgacacggacgccggtgcggtccggagc
cgtcaggtcgcggcgcacgaggtcgacccgtaccgcggcgaaaccgctgctgccgtcgag
gatgtgcgcgcctggctgcgtgacggctggcgcgtcgtctgcgtcaccgagggtcacggt
ccggctcagcggctggccgaggtgttctccgaggcggagctgccggcgcggaccgtcgag
gagatcgacggcgtgcccgagcccggcgtcgtactgatctcccagggcgccctggatcgc
gggttcattgccgagggcatcaagttcgcggtactgaccgagaacgacctggccggccag
cggagtgcggccgaaaggcgttcccagcaacggatgccgagccgccggaagaaggcggtc
gacccgctggagctggcgcccggcgactacgtcgtgcacgagcagcacggcgtgggccgg
tacggcgagatgctgcaacgcaccgtcggcaccggctcccagaaggccactcgcgagtac
atcgtgatcgagttcgcgccgagcaagcgcggccaacccggtgaccggctgtatgtgccg
accgaccagctcgaccaggtcacccggtacgtcggcggcgagcagcccacgctcgacaag
atgggcggcggcgactgggccaagcgcaagggccgtgcacgcaaggcggttcgccagatc
gcgggcgagctgatcaagctgtacgccgcgcggcaggcgaccaaggggcatgccttctcc
aaggacaccccctggcagcgcgagctggaggacgccttcccgttcgtggagacgccggac
cagctggccaccatcgacgacgtgaagcgcgacatggagcgggtcacgccgatggaccgg
atcgtctgtggcgacgtcggctacggcaagacggagatcgccgtccgggcggccttcaag
gcggtgcaggacggcaagcaggtcgccatcctggttcccaccacgctcctcgtccagcag
cactacgcgaccttcgccgagcggtacgccgcgttcccggtgaacgtggcgccgttgtcg
cggttccagaccgacaaggaggccaaggccaccatcgaggggctggccgacgggtcggtc
gacgtggtgatcgggacgcaccggctgttcagcggcgaggtcgcgttcaaggacctcgga
ctggtcgtggtcgacgaggagcagcggttcggcgtcgagcacaaggagcagctgaagcaa
ctgcggacggccgtcgacgtgctgacgatgtccgcgaccccgatcccgcgcaccctggag
atgtcgatcaccggcatccgggagatgtcgacgatcgcgacgccgccggaagagcggcac
ccggtactgaccttcgtcggtgcttacgaagagggtcaggtgaccgcggcgatccggcgc
gagctgctgcgtgagggccaggtcttcttcgtccacaaccgggtcaacacgatcgagaag
gcggccgcgcggatccgccagctggtcccggaggcccgggtcagcgtggcgcacgggcag
atgccggagcaccaactggaacaggtcatccagggcttctgggagaaggagtccgacgtc
atcgtctgtacgacgatcgtcgagtccgggatcgacatctcgaacgcgaacaccctgatc
gtcgagcgctccgacctgctcgggctctcgcagctgcaccagcttcgcggccgggtcggg
cgaggacgcgagcgggcgtacgcgtacttcttcttcccaccggagaagccgctcaccgag
accgcgcacgaccggctcgccaccatcgcgcagcacgccgacctcggtgccggtatgcag
gttgcgatgaaggacctggagatccgtggcgcgggcaacctgctgggcggcgagcagtcc
ggccacatcgccgacgtcgggttcgatctgtacgtccggctggtcggcgaggcggtcgcg
gagtaccggggtgacacccaggccgacgagcccgaggtcaagatcgagctgccgatcgac
gcacaccttccgcacgactacgtgccgtcacagcggctgcggctggagatgtaccagcgg
ctggccgccgtacgggatgcggacgggatcgcggagctggtcgaagagctgcacgaccgg
tacggcgacatcccacagccggtgctgaacctgatcgaggtggcgaagttccgcaaccac
gcccgtactgcggggctgcaggacgtcactctgcagggcaatctgatccggttcggaccg
gtcgacctgcccgattcgaaggtgctgcggctgaacaggctgtacccgaagagtctggtc
aaggcgcaactgcgtacgatcctggtgccaagacctgccacccggccggtcgccggtcag
ccgctccgcgaccaggagctgctgcggtggtgtaccagactgatcgacgatgtgatcgcc
gagcccgtagggccaccggcctga
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