Komagataeibacter rhaeticus: GWK63_08410
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Entry
GWK63_08410 CDS
T06497
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kre
Komagataeibacter rhaeticus
Pathway
kre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GWK63_08410 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kre03400
]
GWK63_08410 (mfd)
Enzymes [BR:
kre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GWK63_08410 (mfd)
DNA repair and recombination proteins [BR:
kre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GWK63_08410 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_16
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QIP35477
UniProt:
A0A181CB06
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All DBs
Position
1855001..1858483
Genome browser
AA seq
1160 aa
AA seq
DB search
MNTTAGFSLAPDAPLPVWGVPDGYDAFLLARRLREGPGPVLHVCRDDAGLARVADQLAFV
APDAEILRFPGWDCLPYDRVSPNPAIVAERVATLTRLLEKADRPRIVLTTVMGLVQRVAP
RAAFAGQSITITAGESLDAPFLMELLIAHGYNRTDTVMEQGEFATRGGIFDIFPAGESEP
VRLDLFGDEVENIRRFDPGTQRSTAKITSLTMRPVADFSLDPAAISRFRTGWRDLFGPAA
ASDPLYQHISDGRRHAGMEHWLPLFHEQMETLVDYMPGVSISLANQAEEVLATRLEMIAD
HYDARRQPTREGEVPYRALPPHLMYLDRKGWDALLVGKKAVVFMPFAQPDGAPGMDAGGR
PGQMFAKSVTDGRENVFPMLHAKVEEWAQTGRRAYVTAWSRGSCERIGVLLREYRLPVQG
FATWKEAQKLRPGTVGLLTLGLERGFVADNLAFVSEQDLLGERISRPPRRRKKADQFIAE
ASEIAEGDLVVHQDYGIGRYDGLETIGVGTAPHDCLRLIYDGNEKLFLPVENIELLSRFG
SDQAHVALDRLGGVSWQSRKAKMKQRIRDMAGELIRTAAARALREAPALTPEDGMWDEFC
ARFPFVETEDQSRAIADVLDDMASGKPMDRLVCGDVGFGKTEVALRAAFVAAMSGAQVAV
VVPTTLLARQHYRTFSARFAGLPVNVAQLSRMVTPKEATAVRKGLADGTVNIVIGTHALL
AKTVKFADLGLLIVDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREMS
LIATPPTDRLAVRTFIMPFDSVVIREAIQRERFRGGQVFCVVPRIEDLDRMATRLSEIVP
DARLVQAHGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLG
QLYQLRGRVGRGKQRGYAYLTWPQTHVLSAAAQKRLEVMQTLDTLGAGFTLASHDLDLRG
AGNLLGDEQSGHIREVGIELYQQMLEDAVADLRTEKGRRRLQDRDWTPNIILGLPVLIPD
SYVTDLPVRLGLYRRIAGLANDAEVEAMEAELVDRFGTLPDEVRNLLDVVTLKRMCREAG
VERLEAGPKGMVIQFRGNSFANPAGLVAWIARQKEANVRLRPDHKLAVIREMTNAQRITQ
ARKVLAALVRLAQEGTTVPA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgacggcaggcttctccctggcacccgacgcgcccctgcccgtatggggcgtg
ccggatggatatgacgcgttcctgcttgcacgaaggctgcgcgaggggcctggccccgtg
ctgcatgtctgccgcgatgatgcgggcctggcccgcgttgccgaccagctggcctttgta
gcacccgatgcggaaatcctgcgttttcccggatgggactgcctgccgtatgaccgcgtc
tcccccaatcccgccatcgtggcggagcgggtggcaacgctgacccgactgctggaaaag
gcggaccggccccgcatcgtgctgaccacggtgatggggctggtgcagcgcgtggccccg
cgtgccgcctttgccgggcagtccatcacgattacggccggggaaagccttgatgccccg
ttcctgatggaactgctcatcgcccatggctacaaccgcaccgacacggtgatggaacag
ggtgagttcgcaacgcgcggtggcatattcgacattttccccgcgggcgagagcgaaccc
gtacgccttgacctgttcggcgacgaggtggagaacatccgccggtttgatcccggcacc
cagcgctcgaccgcgaagatcaccagcctgaccatgcgcccggtggccgatttcagtctc
gaccccgcggccatttcgcgctttcgcaccggctggcgcgacctgtttggcccggcggcg
gccagtgacccgctgtaccagcatatatccgatggcaggcgccacgcgggcatggagcac
tggctgcccctgttccatgaacagatggaaacgctggtggattacatgcccggtgtctcc
atctcgctggccaaccaggccgaggaagtgctcgccacgcggctggaaatgattgccgac
cattacgatgcccgcaggcagcccacgcgggaaggggaagtgccctaccgcgccctgccg
ccgcacctgatgtatcttgaccgcaaggggtgggacgccctgctggtgggcaaaaaggcc
gtggtgttcatgccctttgcccagcccgatggcgcgccgggcatggatgcgggcggcagg
ccggggcagatgttcgccaaaagcgtgaccgacgggcgcgagaacgtcttccccatgctg
catgcgaaggtggaggaatgggcgcagaccggccgccgcgcgtatgtgaccgcatggagc
cgtggctcgtgcgagcgtattggcgtgctgttgcgtgaataccgcctgccggtccagggc
ttcgccacatggaaagaggcgcagaagctcaggcccggcaccgtggggctgcttacgctg
gggctggaacgtggctttgtcgctgacaatcttgcctttgtttccgaacaggacctgctg
ggcgagcggatctcgcgcccgccccgccgccgcaagaaagccgaccagttcatagccgaa
gcctccgaaattgcggaaggcgatctggtcgtccatcaggattatggcatcggccgctat
gacgggctggagaccatcggcgtgggtaccgcaccgcatgactgcctgcgcctgatctat
gatggcaacgaaaagctgttcctgccggtcgagaacatcgagctgctcagccgcttcggc
tcggaccaggcgcatgtggcgctggacaggctgggtggcgtgtcgtggcagtcgcgcaag
gcgaagatgaagcagcgcatccgcgacatggcgggcgaactgatccgcaccgccgccgcc
cgtgccctgcgtgaagcgcccgcgctgacaccggaggacgggatgtgggatgaattctgc
gcccgcttcccctttgtcgagaccgaggaccagtcccgcgccatagccgacgtgctggac
gacatggcatcgggcaaacccatggaccggctggtctgtggtgatgtgggctttggcaag
acggaggtggcgctgcgggccgcgttcgttgccgccatgtcgggcgcgcaggtggcggtt
gtggtgccgaccacgctgctcgcgcgccagcattaccgcaccttctccgcccgctttgcc
gggttgccggtcaatgtggcgcaactgtcgcgcatggtcacgccaaaggaggcgacagcc
gtgcgcaagggcctggccgatggcacggtcaatatcgtgatcggcacccatgccctgctg
gccaagaccgtcaaattcgccgaccttggcctgctgatcgtggatgaagagcagcatttt
ggcgtggcccacaaggaaaagctgaaggcgctgcgcgaggacgtgcatgtgcttaccctt
tccgcaacgccgctgccgcgcacgctccagcttgccctgaccggcgtgcgggaaatgagc
ctgatcgcaacgccccccaccgaccggctggccgtgcgtaccttcatcatgccctttgac
agcgtggtgatccgcgaggcgatccagcgcgaacgcttccgtggcgggcaggtcttctgc
gtggtgccacgcatcgaggatctggaccgcatggccacgcgcctgagcgagatcgtgccc
gatgcacggctggtgcaggcccatggccgcctgacgccgaccgaactggaacgggtgatg
accgagttcagtgacggcaaatacgacatcctgctgtccaccaacattgtggaaagcggg
ctggacatgccggcggtcaacacgctcatcatccaccgcgccgacatgttcggcctgggc
cagctctaccagctgcgcgggcgcgtggggcgtggcaagcagcgcggctatgcctacctg
acatggccacagacgcatgtgctctcagccgccgcccagaagcggctggaagtcatgcag
acgctggacacactgggggcgggcttcacgctggcctcccacgaccttgacctgcgcggg
gcaggcaacctgctgggggatgaacagtcgggccatatccgtgaagtgggcattgaactg
taccagcagatgctggaagacgccgtggccgacctgcgcaccgaaaagggacggcgcagg
ctgcaggaccgcgactggacacccaacatcatccttggcctgccggtactcatacccgac
agctatgtgaccgacctgccggtgcgccttgggctgtaccgccgcatcgcgggcctggcc
aatgatgcggaggtggaagcgatggaggccgaactggtggaccgcttcggcacgctacct
gatgaggtacgcaacctgctggatgtggtcacactcaagcgcatgtgccgcgaggcaggg
gtggagcgactggaagccgggccaaagggcatggtcatccagttccgtggcaacagcttt
gccaacccggcgggactggtggcgtggattgcccggcagaaggaagccaatgtccgcctg
cgccccgaccacaagcttgcggtcatacgtgaaatgaccaatgcccagcgcatcacgcag
gcgcgcaaggtgcttgcggcactggtcaggctggcgcaggaggggacgaccgttccggcc
tag
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