Kocuria rhizophila: KRH_17060
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Entry
KRH_17060 CDS
T00701
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
krh
Kocuria rhizophila
Pathway
krh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
krh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KRH_17060 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
krh03400
]
KRH_17060 (mfd)
Enzymes [BR:
krh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KRH_17060 (mfd)
DNA repair and recombination proteins [BR:
krh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KRH_17060 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAG30053
NITE:
KRH_17060
UniProt:
B2GL97
LinkDB
All DBs
Position
complement(1931962..1935726)
Genome browser
AA seq
1254 aa
AA seq
DB search
MSLTGLLTALTEDRSFANIRAQAARPLAERSAETIISATDGLRAPVLAQIAAGLADDAAA
SAPAGSGTSAAEAHAPVLLAVTATGREAEELQAALGSYLPSEQIANFPSWETLPHERLSP
RSDTVGQRLSVLRRLERTDPSEQPLRVVVAPVRSVLQPVVAGLGQMEPVTLRTGQDYDFQ
QLVVELAGAAYSRVDMVTRRGEFAVRGGIIDVFPPTEDHPVRAEFFGDELDEMRWFAVAD
QRTLTTAEHPSVIVAPPCRELLITPSVQSRAAKLKEQLPGGREMLERIAGGQYVEGMESL
APLLADEMLQVMSLLPAGSMTVVLEPEKVRARAHDLVATNEEFLMAAWDSASGGSEAPLD
LNAALDTDDDAARTLSSGSFHTIAEVRDLALERSVGWWSVTGLNVNAVTTSQMDADTSDE
EVHLADTDADTLTVTAREPTRFSGDVPAVLSFLGERAREDWRIVLVTDGPGPLQRLSELL
HGADVPAARYDSVDDAPQPGLVELTTARAGRGFVIEGQRIALLTEADVLGRSSTYDNRAE
RKLPQRRKRNQVDPLALQKGDYVVHEQHGIGQFIELVQRPIAGAMTAPGQPKPVREYLVL
EYAASKRNGPRDRLFVPTDQLDQVSTYVGGEAPSLSKMGGADWNKTKRSAKKAVKEIANE
LIRLYSARMASKGHSFGPDTPWQRELEQAFPYIETPDQLTTIDEVKADMERPIPMDRLIS
GDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHSETFAERFSGFPVRLATLSRFQ
TAKESKATMEGLRSGAVDVVIGTHRLLSKEMQFKNLGLVIIDEEQRFGVEHKEKLKAMRT
DVDVLAMSATPIPRTLEMSMTGIRETSTLATPPEERHPVLTYVGPYTNKQVSAAIRRELM
REGQVFFIHNRVSTIEAQAKELAELVPEARIAVAHGQMTESRLEQIIVDFWEKKFDVLVC
TTIVETGLDIANANTLIVDHADRYGLSQLHQLRGRVGRGRERAYAYFLYPAEKPLSETAL
ERLKAVAAHNELGSGMQLAMKDLEIRGAGNLLGGEQSGHIAGVGFDMYLRLVGEAVAEYR
GDQDTGPAEMKIELPVNAHLPHDYVPGERLRLEAYRTIANAATEEAVAEAGEELTDRYGP
LPTPVENLLEVARLRIRARAAGLTDVATQGTMVRFSPAELTESRQMRLTRMYQGAQVRPV
PGTDERMVLIPKPKTARIGGKDLVDGDILAWAREVLDAIFPVLEPAGGTDDAAG
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgaccggtctgctcaccgcgctcaccgaggaccgcagcttcgcgaacatccgc
gcccaagccgcgcgcccgctcgccgagcgctctgcggagacgatcatcagcgccacggac
gggctgcgcgctcctgtgctcgcgcagatcgccgcgggtctcgcggacgacgccgcggcg
tcggctcctgcgggctccggcacctccgccgcggaggcccacgccccggtgctgctcgcc
gtgacggccacgggccgcgaggccgaggagctgcaggccgcgctgggctcctacctgccg
agtgagcagatcgcgaacttcccgtcctgggagaccctgccgcacgagcggctgtccccg
cgctcggacaccgtggggcagcggctgagtgtgctgcgccggctggagcgcacggacccc
tccgagcagccgctgcgcgtggtggtggcgccggtgcgctcggtgctgcagcccgtggtc
gcggggctcgggcagatggagcccgtgacgctgcgcacggggcaggactacgacttccag
cagctcgtcgtggagctggccggtgccgcctactcgcgcgtggacatggtcacccggcgc
ggtgagttcgcggtgcgcggcgggatcatcgacgtgttcccacccaccgaggaccacccc
gtgcgcgcggagttcttcggggacgagctggacgagatgcgctggttcgcggtggcggac
cagcgcaccctgaccactgccgagcacccctcggtgatcgtggccccgccgtgccgcgag
ctgctcatcaccccgtccgtgcagtcccgggcggccaagctcaaggagcagctgccgggt
gggcgcgagatgctcgagcgcattgccggcgggcagtacgtggagggcatggagtccctc
gcgccgctgctcgcggacgagatgctgcaggtgatgtccctgctgcccgcgggctccatg
accgtggtgctcgaacccgagaaagtccgggcgcgcgcgcacgacctcgtggccaccaac
gaggagttcctcatggccgcgtgggactccgcctcgggcggcagcgaggcgcccctggac
ctcaacgcggccctggacacggacgacgacgccgcccgcaccctctcgtccgggtccttc
cacacgatcgccgaggtgcgcgatctcgccctggagcgttcggtgggctggtggtccgtg
accgggctgaacgtcaacgccgtgaccacctcccagatggatgcggacacctccgacgag
gaggtccacctcgcggacacggacgcggacaccctcaccgtgacggcgcgcgaacccacc
cggttctcgggggacgtgcccgcagtgctgtccttcctaggggagcgggcgcgcgaggac
tggcgcatcgtgctggtcacggacgggcccgggcccctgcagcggctgagcgagctgctg
cacggcgcggacgttcccgcagcccggtacgacagcgtcgacgacgccccgcagcccggt
ctcgtggagctgaccaccgcgcgcgcaggtcggggcttcgtgatcgaggggcagcggatc
gcgctgctcaccgaggcggacgtgctgggccgctccagcacctacgacaaccgcgccgag
cgcaagctcccgcagcgccgcaagcgcaaccaggtggaccccctggccctgcagaagggc
gactacgtggtgcacgagcagcacggcatcgggcagttcatcgagctcgtgcagcggccc
atcgcgggcgccatgacggctccgggtcagccgaagccggtgcgcgagtacctcgtgctg
gaatacgcagcgtccaagcgcaacgggccgagggaccggctgttcgtgcccacggaccag
ctcgaccaggtgagcacctacgtgggcggcgaggcgccgtcgctgtccaagatgggcggg
gcggactggaacaagaccaagcgcagcgccaagaaggccgtcaaggagatcgccaacgag
ctgatccggctgtactcggcgcgcatggcctccaagggccactccttcggcccggacacc
ccgtggcagcgtgagctggagcaggcgttcccgtacatcgagaccccggaccagctcacc
accatcgacgaggtcaaggcggacatggagcggcccatccccatggaccggctgatctcc
ggggacgtgggctacggcaagaccgaggtggcggtgcgcgccgcgttcaaggccgtgcag
gacggcaagcaggtggcggtgctcgtgcccaccacgctgctcgcccagcagcactccgag
acgttcgccgagcggttctcgggcttccccgtgcgcctggccacgctctcgcgcttccag
accgccaaggagtccaaggccacgatggaggggctgcgcagcggcgcggtggacgtggtg
atcggcacccaccggctgctgagcaaggagatgcagttcaagaacctgggcctcgtgatc
atcgacgaggagcagcgcttcggcgtggagcacaaggagaagctcaaggccatgcgcacg
gacgtggacgtgctggccatgtccgccacgcccatcccgcgcaccctggagatgtccatg
acgggcattcgcgagacctccacgctggccaccccgcccgaggaacgccaccccgtgctc
acgtacgtgggtccttacacgaacaagcaggtctccgcggccatccggcgcgagctcatg
cgcgagggccaggtgttcttcatccacaaccgtgtctccaccatcgaggcgcaggccaag
gagctcgcggagctcgtgcccgaggcgcggatcgcggtggcccacgggcagatgaccgag
tcccgcctggagcagatcatcgtggacttctgggagaagaagttcgacgtgctggtgtgc
accaccatcgtggagaccggtctggacatcgccaacgccaacacgctgatcgtggaccac
gcggaccgctacgggctctcccagctgcaccagctgcgcggccgtgtgggccgggggcgc
gagcgcgcctacgcgtacttcctgtacccggcggagaagccgctgagcgagaccgccctg
gaacggctcaaggccgtggccgcgcacaacgagctgggctcgggcatgcagctggccatg
aaggacctcgagatccgtggtgcgggcaacctgctgggcggtgagcagtccgggcacatc
gcgggcgtgggcttcgacatgtacctgcgcctggtgggcgaggccgtggcggagtaccgc
ggggaccaggacaccgggcctgcggagatgaagatcgagctgcccgtcaacgcgcacctg
ccgcacgactacgtgcccggggagcggctgcgcctggaggcctaccgcaccattgcgaac
gccgccacagaggaggccgtggccgaggcaggggaggagctcacggaccgctacgggccc
ctgcccaccccggtggagaacctgctggaggtcgcccggctgcggatccgggcgcgcgcc
gcgggcctcacggacgtggccacgcagggcaccatggtccgcttctcgcccgccgagctc
accgagtcccggcagatgcgcctgacccgcatgtaccagggagcgcaggtccgccccgtg
ccgggcacggacgagcgcatggtgctgatccccaagcccaagaccgcgcggatcggtggc
aaggacctcgtggacggggacatcctcgcgtgggcccgcgaggtgctcgacgcgatcttc
ccggtgctcgaacccgccggcggcacggacgacgccgcggggtag
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