Kocuria rosea: EQG70_12445
Help
Entry
EQG70_12445 CDS
T06074
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
krs
Kocuria rosea
Pathway
krs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
krs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EQG70_12445 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
krs03400
]
EQG70_12445 (mfd)
Enzymes [BR:
krs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EQG70_12445 (mfd)
DNA repair and recombination proteins [BR:
krs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EQG70_12445 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
DUF3638
RecG_dom3_C
PBP_like_2
Motif
Other DBs
NCBI-ProteinID:
QCY33574
LinkDB
All DBs
Position
complement(2711928..2715647)
Genome browser
AA seq
1239 aa
AA seq
DB search
MTLSGLLAALGAERSFANLRTQAGLAPGERSAETVISAPDGMRAVLTAQLCGALDDAPAP
ADSRAPVLLAVTATGRESEDLAAALGAYLPAQEVAEFPAWETLPHERLSPRSDTVGRRLD
VLRRLAGKDAERPLRVVTAPVRSVLQPVVEGLGDMAPVRFARGEELDFDAAVTSLAEAAY
ARVDMVTRRGEFAVRGGIIDVFSPVEDHPVRIEFFGDEVDELRWFAVADQRTLTTGDHPE
RLVAPPCREVLITPSVMSRAAKLKNSLPGAESMLERIAGGIYVEGMESLAPLLVDGLVPM
LSLLPPGSLVVVMEPEKVRTRAHDLVATNEEFLLAAWDSASDGQSAPIDITSAEHVVRND
DGEGRTLASGSFQTLAEARATALGTGLGWWAVTALNVNAVAGQDVDADTAAEDIALIDSD
ADTLTVAARDPLGFHGDVEAMLEFLQGRVADGWRVVAVTEGPGPLARIAELLHEAGVPAA
RRETLAEQPQPGIVELTTAVAGKGFALDGPRIVLLTEADLLGKASPYTTKDMRKLPVRRK
RNAVDPLALSQGDFVVHEQHGIGQFVELIQRPIAGAMIKPGQPKPVREYLVLEYAPSKRN
GPRDRLFVPTDQLDQVTNYVGGETPTLSKMGGTDWNKTKRAAKKAVRDIANELIRLYSAR
MASRGHAFAEDTPWQRELEEAFPYIETPDQLTTIDEVKADMEREVPMDRLISGDVGYGKT
EVAVRAAFKAVQDGKQVAVLVPTTLLAQQHAETFTERFSGFPVRLAALSRFQTAKETKET
LAGLKDGTVDVVIGTHRLLSKEVQFKDLGLVVIDEEQRFGVEHKEKLKAMRTNVDVLAMS
ATPIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGAYTDKQVSAAVRRELMREGQVFYI
HNRVSSIERKAKELAELVPEARIAVAHGQMSESRLEQIIVDFWEKKFDVLVCTTIVETGL
DIANANTLIVDGADRYGLSQLHQLRGRVGRGRERAYAYFLYQAEKPLSETALERLKAVAA
HNELGAGMQLAVKDLEIRGAGNLLGGEQSGHIAGVGFDMYLRLVGEAVAEYRGEEDERPT
EMKIELPVNAYLPHDYVPGERLRLEAYRNLANAATEESIQEVADELVDRYGEVPEPVQNL
LEVARFRVTARAAGLTDVAAQGNMVRFAPADLPESRQMRLTRLYPGAQVKAVPGTDTFQV
LIPKPKTERIGGKDLVDGAVLAWARGVVEAVFAKEPATA
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgaccttgtccggactgctcgccgccctcggggcggagcgctccttcgccaatctccgc
acccaggccggcctggcgccgggggagcgcagcgccgagaccgtgatcagcgccccggac
gggatgcgcgcggtgctcacggctcagctgtgcggcgccctcgacgacgcccccgcgccg
gcggactcccgcgccccggtgctgctggccgtcaccgcgaccggccgcgagtccgaggac
ctcgccgcggccctgggcgcgtacctgccggctcaggaggtcgcggagttcccggcctgg
gagaccctgccgcacgagcggctctcgccccgctcggacactgtgggccgccgcctggac
gtgctgcgccggctggccggcaaggatgccgagcgcccgctgcgagtggtcacggccccg
gtccgctccgtgctccagcccgtcgtcgaaggcctgggggacatggccccggtgcgcttc
gcccggggcgaggagctcgacttcgacgccgccgtgacctcgctcgccgaggccgcctac
gctcgggtggacatggtcacccggcgcggggagttcgccgtgcgcggcgggatcatcgac
gtcttctcgccggtcgaggaccacccggtgcgcatcgagttcttcggggacgaggtcgac
gagctgcgctggttcgccgtggccgaccagcgcaccctgaccaccggggaccacccggag
cggctcgtggccccgccgtgccgcgaggtgctcatcaccccgtccgtgatgtcccgggcc
gcgaagctcaagaactccctgccgggcgcggagtccatgctcgagcggatcgccggcggc
atctacgtggagggcatggagtccctcgcgcccctgctggtggacggcctggtgcccatg
ctgtccctgctcccgcccggttcgctcgtggtggtcatggagccggagaaggtccgcacc
cgcgcccacgacctcgtggccaccaacgaggagttcctcctcgccgcgtgggactccgcc
tcggacgggcagtccgcgcccatcgacatcacctccgccgagcacgtcgtccggaacgac
gacggcgagggtcgcaccctggcctccgggtccttccagaccctcgccgaggcccgggcc
accgcgctggggaccggcctcggctggtgggccgtcaccgcgctcaacgtcaacgcggtg
gcgggtcaggacgtggacgcggacaccgccgcggaggacatcgccctcatcgactcggac
gcggacaccctcaccgtggccgcccgggacccgctgggcttccacggggacgtcgaggcg
atgctcgagttcctgcaggggcgggtggccgacggctggcgcgtcgtcgccgtcacggaa
gggcccggtccgctggcccggatcgcggagctgctgcacgaggccggggtccccgccgcc
cgccgcgagaccctcgccgagcagccgcagcccgggatcgtggagctcaccaccgccgtg
gccggcaagggcttcgccctggacgggccgcggatcgtcctgctcaccgaggcggacctg
ctgggcaaggccagcccctacaccaccaaggacatgcgcaagctcccggtgcggcgcaag
cgcaacgccgtggaccccctggcgctgagccagggcgacttcgtggtgcacgagcagcac
ggcatcggccagttcgtggagctcatccagcggcccatcgccggggcgatgatcaagccc
ggccagccgaagcccgtgcgcgagtacctggtgctcgagtacgcgccctccaagcgcaac
ggcccgcgggaccgcctgttcgtgcccaccgaccagctggaccaggtcaccaactacgtg
ggtggcgagacccccaccctgtccaagatgggtggcacggactggaacaagaccaagcgc
gccgccaagaaggccgtccgggacatcgccaacgagctgatccgcctgtactcggcgcgg
atggcctcccgcgggcacgccttcgcggaggacaccccgtggcagcgcgagctcgaggag
gcgttcccctacatcgagacgccggaccagctgaccaccatcgacgaggtcaaggcggac
atggagcgggaggtccccatggaccggctgatctccggggacgtgggctacggcaagacc
gaggtggcggtgcgcgcggcgttcaaggccgtgcaggacggcaagcaggtcgccgtgctc
gtgcccaccacgctgctcgcccagcagcacgccgagacgttcaccgagcgcttctccggc
ttcccggtgcgcctggccgcgctctcccggttccagaccgccaaggagaccaaggagacg
ctcgccggtctgaaggacgggaccgtggacgtggtgatcggcacccaccggctgctgtcc
aaggaggtccagttcaaggacctcggcctcgtggtcatcgacgaggagcagcgcttcggc
gtggagcacaaggagaagctcaaggcgatgcgcaccaacgtggacgtcctggcgatgtcc
gcgacccctatcccgcgcaccctggagatgtccctgaccggcatccgcgagacctccacc
ctggccaccccgccggaggagcgccaccccgtgctcacctacgtgggcgcctacaccgac
aagcaggtctccgccgccgtccggcgcgagctcatgcgcgagggccaggtcttctacatc
cacaaccgggtctcctcgatcgagcgcaaggccaaggagctcgccgagctcgtgcccgag
gcgcggatcgccgtggcgcacgggcagatgtccgagtcccggctcgagcagatcatcgtg
gacttctgggagaagaagttcgacgtcctggtctgcaccaccatcgtggagaccggtctg
gacatcgccaacgccaacaccctgatcgtcgacggcgcggaccgctacggcctctcgcag
ctccaccagctgcgcgggcgcgtgggtcgcggccgggagcgggcctacgcctacttcctg
taccaggccgagaagccgctctccgagacggcgctggagcggctcaaggccgtcgccgcc
cacaacgagctcggcgccggcatgcagctggccgtcaaggacctcgagatccgcggcgcc
ggcaacctgctgggcggtgagcagtccgggcacatcgccggggtgggcttcgacatgtac
ctgcgcctggtcggcgaggccgtcgccgagtaccgcggcgaggaggacgagcggcccacc
gagatgaagatcgagctgcccgtcaacgcctacctgccgcacgactacgtcccgggggag
cggctgcgcctggaggcctaccgcaacctcgccaacgccgccacggaggagtcgatccag
gaggtcgccgacgagctcgtggaccgctacggcgaggtgcccgaacccgtgcagaacctg
ctcgaggtcgcccgcttccgggtgaccgcccgcgccgccggcctcaccgacgtcgcggcg
cagggcaacatggtccgcttcgccccggccgacctccccgagtcccggcagatgcggctc
acccgcctctaccctggcgcgcaggtcaaggcggtgcccggcaccgacaccttccaggtg
ctcatccccaagcccaagaccgagcggatcggcggcaaggacctcgtggacggcgccgtg
ctcgcctgggcccgcggcgtggtcgaggccgtcttcgcgaaggagccggccacggcctga
DBGET
integrated database retrieval system
