Komagataeibacter saccharivorans: CD178_02504
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Entry
CD178_02504 CDS
T05634
Symbol
ykoU
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ksc
Komagataeibacter saccharivorans
Pathway
ksc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ksc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CD178_02504 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ksc03400
]
CD178_02504 (ykoU)
Enzymes [BR:
ksc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CD178_02504 (ykoU)
DNA repair and recombination proteins [BR:
ksc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CD178_02504 (ykoU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AXY23251
UniProt:
A0A347WEF8
LinkDB
All DBs
Position
complement(2643253..2644179)
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AA seq
308 aa
AA seq
DB search
MPVMDTSSAQPEKQPARAVTLTHPDRVYWPDVGITKAGLADYYTAVWPRIAPFIIDRPLA
LLRCPEGMEGPHFFQKNAWKGMNAHIVPLDDPMGDAAGHLIGIHELDGLMGLVQGATLEI
HPWGASCRDWDHPDTLVMDLDPGEGVEWQAVITAAQEVRERLEASGLAAFVKTSGGKGLH
VVAPLQPAADWDMAKTFSHTMAQAMAADSPDRFVATVSKAKRHGRILIDYLRNQRGATSV
SPYSTRARTGAPVSMPVGWEELDTITGPAQFTVNNAMERLASLRTDPWKDFPAARQPITT
AMLSRPGH
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgccagtcatggacacatcatcggcccagcccgaaaaacaacccgcacgcgctgtcacc
ctgacccatcccgaccgggtttactggcctgatgtcggtattaccaaggcagggctggcc
gactactatacggcggtatggccccgtatcgcgccgtttattatcgaccggccacttgcg
ctgctgcgctgcccggaggggatggaaggaccgcactttttccagaaaaacgcatggaaa
ggcatgaacgcccatatcgtgccgctggatgacccgatgggagatgccgcagggcatctg
atcggtattcatgagcttgatggccttatggggctggtgcagggggcaacgctggaaatt
catccgtggggggcgtcctgccgcgactgggaccatcccgatacactggtcatggacctt
gatccgggggaaggggttgagtggcaggccgtcatcacggctgcgcaggaagtgcgcgaa
cggcttgaagccagtggcctggcggcattcgtcaagacgtccgggggcaaagggctgcat
gtggtcgcgcctttgcaacccgcagccgactgggatatggcaaaaaccttctcccacacc
atggcgcaggctatggcagccgacagtccggaccgctttgtcgcgactgtgtccaaagcg
aaacgccatggcagaatcctgattgattacctgcgcaatcaacggggcgcgacctccgta
tccccctattcaacgcgtgcccgcaccggtgccccggtctcgatgcctgttgggtgggaa
gaactggatacgattaccggtccggcgcaattcacggtaaacaacgccatggaacggctt
gcctcactccgcacggacccgtggaaggattttccagcggcgcgtcagccgatcacgaca
gcaatgctttcccggccgggtcattag
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