Kangiella sediminilitoris: KS2013_1050
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Entry
KS2013_1050 CDS
T04467
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ksd
Kangiella sediminilitoris
Pathway
ksd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ksd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KS2013_1050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ksd03400
]
KS2013_1050
Enzymes [BR:
ksd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KS2013_1050
DNA repair and recombination proteins [BR:
ksd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KS2013_1050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
AAA_30
UB2H
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AOE49770
UniProt:
A0A1B3BAD5
LinkDB
All DBs
Position
complement(1132368..1135820)
Genome browser
AA seq
1150 aa
AA seq
DB search
MLLELPQIKQKSNFINHWQGLSGSSRALALAEQARQFDKPLIVICNDAPQVWHLQQEIEF
FLGKSHSDEHTEIPVFSFPDWETLPYDNFSPHQDIVSQRLLTLYQLPRLKQGIVLISMST
LLLRLPPRQYIEQNSLIMHTGQNLDMHEVRALFEQHGYHSVNQVYSHGEFAVRGSILDVF
PMGCDKPLRIDFFDDEIDTIRYFDPESQLSDETINKFELLPAKEFPLDKTGIETFRQNFR
STFDVDLQRVWLYQEVSNGNAPAGIEYYLPLFFEGVSTLFDYLPDGSLLCSLGRHDSAIE
DYWSEITERYEQRRHDIERPILPPSELYLNEDELNSLLKETFRIRLEPSSPADSNITQPI
PQMPIEHKASDPAHHLRNFLSHWKGKVLIATESPGRREALKDLLERHDIAASTSASWQET
IKNITPKALEIGVAPLTQGFAIGNLAVITEMELFGEQAIQRRTTNKDNKASIQAEDVIRN
LAELKEGDPVVHVEQGIGRYRGLEKLTSGDLEAEYLMIEYSGGDKLYIPVQSLHLISRYS
GTNPELAPWHKLGNEQWDKAKAKAAERARDVAAELLDVYARREAKEGHAYQLDESEYNRF
CSEFRFDETPDQVTAINSVIRDMCAPQPMDRLICGDVGFGKTEVALRAAFIAANSGKQVA
MLVPTTLLAQQHFETLSDRFADWPIKVAALSRFATAKENKATLEGLKNGTIDIVVGTHKI
IQQDVKFKRLGLLIIDEEHRFGVRQKEQLKKYRTEVDILTLTATPIPRTLNMSMSGMRDL
SIIATPPAKRLSVKTFVREYNKPLIREAVLREILRGGQVYFLHNSVESIERTAKELQELL
PEARVNSAHGQMRERELEQVMRDFYHQRFNLLVCTTIVETGIDNPNANTMIINRADKFGL
AQLHQLRGRVGRSHHQAYAYLLTPAERKITRDAEKRLDAIASLEDLGAGFTLATHDLEIR
GAGELLGEEQSGQMQAVGFSLFMDMLEQAIKDIKDGKEPSLQQTLSQKTEVELGVSAIIP
DDYIGDVATRLSLYKRIASAKTKDELDALQIEFIDRFGILPIELKNLFAINELILEAQPL
GIGKIDLVHSGVRIRFNQDSPVDPTKLIKMIQMNPALYRFEDSVVLKILTDEEELKPLLK
AIRLVFEKIQ
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgctattagaactcccccagattaaacaaaaatcgaattttataaaccactggcaagga
ttgtcaggctccagtcgtgcacttgctttggcggaacaggcaagacaatttgataaacct
ttgattgtcatctgtaatgatgccccacaagtatggcacttgcagcaggaaatagagttc
tttttaggcaaaagtcattcggacgaacatacagaaataccggtattcagttttcctgac
tgggagacactgccttacgataacttcagtccacaccaggacatcgtttcgcaacgactc
ctgacactatatcagctcccgcgcttgaagcagggtattgttctcatcagcatgagtact
ttattactgcgtctacctcctcgtcagtacatagaacagaacagcttaatcatgcacaca
gggcaaaaccttgatatgcatgaagtcagagctttgttcgagcaacatggctatcactcc
gttaaccaggtctactcacacggagaatttgctgtcagaggatcgattcttgatgtattt
cccatggggtgtgataaaccattaagaatcgattttttcgacgacgagatcgatacaatt
cgatattttgatcccgaaagtcagttatcagatgaaacgattaataagttcgagctgttg
ccggccaaagaatttccgctcgacaaaactggcatagaaacattcaggcaaaacttccgt
agtacttttgacgttgatctgcaacgtgtctggctataccaagaagttagtaatggtaat
gctccggcggggattgagtattatttaccactattttttgagggagtcagtacattgttt
gactaccttccggatggcagtctactgtgctccctgggccgacacgattcagccatcgaa
gactactggtcggaaataactgagcgttacgagcagagacgccatgatatcgaacggccc
atactcccaccttcagagctatatctgaatgaagatgagttaaacagcttactcaaggaa
acgttcagaatccgtcttgagccatcttcaccagctgactcgaatattacgcaaccgatc
cctcaaatgccaatagaacacaaggcatcggatccagcccatcatctgcgtaacttcctg
tcacactggaaaggtaaagttctaattgctacggagtccccggggcgtcgcgaagcttta
aaagatttattggaacgccatgatattgcagcgagtacaagtgccagctggcaagaaacc
attaaaaacattactcctaaagctctggagattggtgtagcaccgctgacccaaggtttt
gctattggcaacctcgccgtcattactgaaatggagctgtttggcgaacaagccatccag
cgccgcacaacaaataaagacaataaagcatctattcaggctgaagacgtcatacgcaat
ctggctgaacttaaggaaggcgatcctgtagttcacgtcgagcaaggaattggacgctac
cgaggacttgaaaaactaaccagtggcgatcttgaagctgaatacctgatgattgaatac
tcaggaggagataagctttacatacctgtacagtcgctgcacctcatcagtcgatattct
ggaacaaacccagagcttgccccctggcataaactcggtaacgaacagtgggataaggca
aaagctaaagctgcggaacgagcacgagatgttgcggctgaactgctggatgtatacgcc
agacgggaagcaaaagaaggccacgcttatcagctggacgagtcagagtataatcgcttc
tgcagtgaattccgatttgatgagactcccgatcaggtaaccgctataaactcagttata
agagatatgtgcgcaccacagccaatggatagacttatttgtggcgatgttggctttgga
aaaaccgaggttgcattaagagctgcatttattgctgcaaacagtgggaaacaggttgcc
atgctggtacctaccacccttctcgcacaacagcattttgagaccttgagtgatcgattc
gccgactggccaattaaggtagctgctttatctcgctttgccacagcaaaagagaataaa
gcaaccttagaaggactcaaaaacgggaccatagatattgtggttggtacgcataaaatc
attcagcaggatgtaaagtttaaacgtcttggcttattgataattgatgaagaacatcgt
tttggagttcgccagaaagagcaacttaagaaatatcgcaccgaagttgatatcttgact
ctaaccgctacaccgatacctcggaccttgaatatgtcgatgtcaggtatgcgtgaccta
tctattattgccactcctccggcaaagcggctttcagtaaaaacattcgtgcgcgaatat
aacaaacctcttattcgagaagctgtcctccgagaaattttgcggggtggtcaggtttac
ttcttgcacaatagtgtcgaaagtattgaacgaaccgctaaggagcttcaggagctactg
cctgaagcgagagtcaattcagcccacggccagatgagagagcgcgaactggaacaggta
atgcgtgacttttatcaccaacgctttaatctgcttgtatgtacgaccattgtagaaacg
ggtatagataaccctaatgccaataccatgatcattaatcgtgcggataaatttggctta
gcccaacttcatcagctacgaggccgggtaggacgttcccatcaccaggcttacgcttac
ctgctgacaccagcagaacgtaaaattacccgtgacgcagaaaagcgactcgatgctatc
gcttctctcgaagatttaggtgcgggctttacactcgccacacatgatttagaaattcgt
ggtgccggagagttacttggtgaagagcaatcaggccagatgcaggcagttggattcagt
ctattcatggatatgcttgagcaggcaatcaaagatataaaagacggcaaagaacctagc
ttgcaacaaaccttaagccaaaaaacggaagtggagctcggagtttcagccattattccc
gatgactacattggtgatgtggccacacgactttcactgtataaacgaattgccagtgct
aagacgaaagatgagctcgacgcgcttcaaatagagttcattgatcgttttggaatatta
cctatagagcttaagaatttgttcgccatcaacgaactcattctcgaagctcagccttta
ggaatcggtaaaatagatctggttcactcaggtgtcagaatccggtttaatcaagacagt
ccggtcgatccgacgaagttaatcaagatgattcaaatgaaccctgctttataccgcttt
gaagatagcgttgttcttaaaattttaaccgatgaagaagagttaaagccattactcaaa
gcaatccgactggtttttgaaaaaatacagtaa
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integrated database retrieval system
