Kangiella sediminilitoris: KS2013_417
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Entry
KS2013_417 CDS
T04467
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ksd
Kangiella sediminilitoris
Brite
KEGG Orthology (KO) [BR:
ksd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KS2013_417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ksd03021
]
KS2013_417
Transcription machinery [BR:
ksd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KS2013_417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HEF_HK
BUD22
CDC45
D123
Motif
Other DBs
NCBI-ProteinID:
AOE49141
UniProt:
A0A1B3B8P1
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Position
complement(425166..427037)
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AA seq
623 aa
AA seq
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MSENSQQSQQSQLKLLIARGKEQGFLTYAEVNDHLPPDIVDPEQIEDIIRMINDMGIQVY
ETTPDADELLINDESVTDEEAAEEAAAALASVDGEFGRTTDPVRMYMREMGSVELLTREG
EIDIAKRIEEGIRQVLTAIGNYPDTIRILLDEYEQYKNEFIRLTDIVTGFLDGEEAEFVQ
EESEAAQIANANADSDDEDEDIDSDTDDDEDDDDSEEVDTGPDPEEAEERFSELAKQYDK
TVKAIKRYGREHKSAQKQIEAMREHFMNLKLSPRMFEYLVQNLRTKMDGIREQERYIMHL
AVRKARMPRKTFITTFSGAETNSEWLDGHLAKKSKYSEVLAEHAEEIRKAQRKMQLVEES
CDLSVLEIKEANREMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI
GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM
LQEMGREPQPEELAERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIDS
PVDAATGESLKEVTDEILAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQI
EAKALRKLRHPSRSEKLRTYIDE
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagaattcgcaacaatcacagcagtcacaattaaagttactcatcgcgcgagga
aaagagcaaggtttcttaacttacgcagaagttaacgatcacctaccgccagatatcgtc
gatcctgaacagatcgaagatattattcgcatgattaacgacatgggtatccaggtttat
gaaacgactcctgatgctgatgaactgctgatcaatgatgaatccgttaccgacgaggaa
gctgcagaagaagctgctgctgctcttgccagcgtcgacggagaatttggccgcacaaca
gaccctgtccgtatgtacatgcgcgaaatgggtagcgttgagctgctaacacgtgaaggc
gaaatcgacatcgctaaacgtattgaagaaggtattcgtcaggtacttaccgccataggt
aattacccagatactatccgtatcctgcttgacgaatatgagcaatataaaaatgaattt
attcgtttaactgacatcgtcacaggtttccttgatggcgaagaagctgagttcgttcaa
gaagagtcggaagcagcccagattgcaaacgctaatgcagactctgatgacgaagatgaa
gacattgattcggatactgacgacgatgaagatgatgacgattcagaagaagtcgataca
ggtcctgatcctgaggaagctgaggaacgcttctctgaattagcaaaacagtacgataaa
actgttaaagcaatcaaacgttatggccgtgaacataagtctgcacaaaagcagatcgaa
gccatgcgcgagcacttcatgaacctgaagttgtctccacgtatgtttgaatatctggta
caaaacctacgtaccaagatggatggtatccgtgagcaagagcgctacattatgcacctt
gcggtacgtaaagctcgtatgccacgtaaaacatttatcacaaccttctcaggtgcggag
accaattctgagtggttggacggccatttagctaagaagagtaagtactcagaagtacta
gccgagcacgcagaagagatccgtaaagcccagcgtaaaatgcagctggtcgaagaaagc
tgcgatctaagcgtgctggaaattaaagaagccaaccgcgaaatgtcgattggtgaagca
aaagcacgtcgtgcgaaaaaagagatggttgaagcaaacttgcgtctggttatctctatc
gccaagaaatacaccaaccgaggcttacagttcctggatctgattcaggaaggtaatatc
ggtttgatgaaagctgtcgataagttcgaataccgccgtggttataaattctcgacctat
gctacctggtggattcgtcaggcgattactcgctccatcgctgaccaggcacgaaccatt
cgtattccggttcacatgatcgaaacgattaacaagttgaaccggatttctcgccagatg
cttcaggaaatggggcgtgagccgcagccggaagaattggcagaacgtatggacatgccg
gaagataaaattcgtaaagttcttaagattgctaaagagccgatctccatggagacgcca
attggcgatgatgaagattcgcatctgggcgactttattgaggactctacgatcgattca
ccggtcgatgcggctactggcgaaagcttgaaagaagtaaccgatgaaattctggctggc
ttaacggctcgcgaggctaaagttctacggatgcgtttcggtatcgatatgaataccgac
cataccctggaagaagtcggtaaacagtttgatgtaacccgtgagcgtattcgtcagatc
gaagctaaagcgctacgtaaactacgtcatccaagtcgttctgagaagctacgtacttat
atcgacgagtag
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