Kytococcus sedentarius: Ksed_01140
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Entry
Ksed_01140 CDS
T00974
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
kse
Kytococcus sedentarius
Pathway
kse03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
kse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ksed_01140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kse03400
]
Ksed_01140
Enzymes [BR:
kse01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Ksed_01140
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Ksed_01140
DNA repair and recombination proteins [BR:
kse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Ksed_01140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zf-TFIIB
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
ACV05206
UniProt:
C7NIY1
LinkDB
All DBs
Position
121153..122097
Genome browser
AA seq
314 aa
AA seq
DB search
MPELPEVEGLAAALRERLEGRVVAEVALASFSALKTVDVLPQSLHGRPVDDVRRYGKLLD
LVVDGTHVVVHLMRAGWVTWHDEVPRTRLRPGGKSPVAVRITLDDGSGMDLYEAGTRKGM
AVYLADDPGTLEALTTLGPDAVSLRPPLESPPLVGVDTTTGEVGVTASTTPEERVAFWVE
ALEGRRTQIKRVLRDQSVVSGIGNGWSDEILHTARLSPFVLAATLEAEEVGRLAEAVHEV
LVGAAERAVGRAPADLKDGKRGGMRVHGRTGEECPVCGDVVREVTYADSSLQYCATCQTG
GQVLADRSTSKFVK
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagctgccggaggtcgaaggactggctgccgcgctgcgtgagcggctggagggt
cgcgtcgtggccgaggtggccctggccagcttcagtgccctgaagacggtggacgtgctg
ccgcaatcgctccacggccggccggtggacgacgtgcgccggtacggcaagctgctggac
ctggtggtggacgggacgcacgtggtggtgcacctgatgcgggccggctgggtcacctgg
cacgacgaggtcccgcgcacccggctgcggccgggcggcaagtcccctgtggcggtgcgc
atcacgctcgacgacggctcggggatggacctgtacgaggccggcacccgcaagggcatg
gcggtgtatctggccgacgatccgggcaccctggaggcgctcaccaccctggggccggat
gcggtgagcctgcgcccgccgctggagtcgccgcccctggtgggtgtggacacgaccacg
ggggaggtgggcgtcaccgcatcgaccacgcccgaggagcgggtggccttctgggtcgag
gcgctcgaggggcggcgcacgcagatcaagcgggtgctgcgggaccagtcggtggtcagc
gggatcgggaacgggtggtccgatgagatcctgcacacggcgcggctctcgcccttcgtg
ctggcggcgaccctggaggccgaggaggtggggcggctggccgaggcggtgcacgaggtg
ctggtgggggcggccgagcgcgcggtgggccgggcgccggcggacctgaaggacggcaag
cgaggcggcatgcgggtgcacgggcggaccggcgaggagtgcccggtctgcggcgatgtg
gtgcgcgaggtgacctacgcggactcgtccctgcagtactgcgccacctgccagaccggt
gggcaggtgctggccgaccgcagcacctcgaagttcgtgaagtga
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