Kytococcus sedentarius: Ksed_19790
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Entry
Ksed_19790 CDS
T00974
Name
(GenBank) DNA ligase D/DNA polymerase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
kse
Kytococcus sedentarius
Pathway
kse03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Ksed_19790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kse03400
]
Ksed_19790
Enzymes [BR:
kse01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Ksed_19790
DNA repair and recombination proteins [BR:
kse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Ksed_19790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACV06977
UniProt:
C7NKD9
LinkDB
All DBs
Position
complement(2062906..2065542)
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AA seq
878 aa
AA seq
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MARSERRTVRVGERTLSVSSLDKVLYPEAGTTKADVVHYYLSVAEVLLPQLAGRPVTRKR
WVDGVGTEGDPGEVFFRKDLEDSAPDWIPTGRIVHANRANSYPLATEAAVLAWFAQVAAL
ELHTPQWRFGPDGQPRRPDRLVLDLDPGEGVGLTECAQVARWCREVLDGMALEAFPVTSG
SKGIHLYAALDGTHDAEAVSAVAHELARALEADHPDLVVSTMKRARRAGKVFLDWSQNNA
SKTTVAPYSLRGRARPTVAAPRTWEELDDPGLAQLELDEVLDRVADGIDPVASLGAGTGP
GGAGEVSSPAPDRLRTYRSMRDPDRTAEPVPADPPREREAPDGELPSFVIQEHHASSLHW
DFRLEHSGVLVSWAVPKGPPLEHDTNRLAVMTEDHPLEYGTFEGTIAAGEYGAGEVTIWD
AGTYERKKWREGKEVIAVLHGRPDGGLGGVPRRFALIQATGMGSERNWLLRLTDEQPGAG
HPQDGSPEEVTAAPSPSRSRADRSDSRTARRALRRRPAPGFTVADLPAAMAATAGTPEQV
ERAVAGGQEWAFEMKWDGYRVVAGVRTAGQGPADADADADAGAEREGAVVLASRNGKDLT
DTFPAAVELTRLLRGEAAERGGAVLDGELVALDDRGRPDFGLLQAALGDGPGVNAAGDPI
ELRYLVFDLLQLGAPGDPEDRQRSLLRIPWGERRELLREVLGTGGDAVSVPPAHTGTLAQ
AQRASRGLGLEGVVAKRVDAVYLPGQRGSAWVKLKTQRHQEVVVIGVRQGRGGRSGGIGS
LLVAVGDDEGELRYAGRVGTGFSAAQLADIEKTLRRIERKTPPVDDVPAADRTDAWWVTP
RLVGEVSLAGRTRDQRVRQAVWRGWRPDKEAGEVRWEV
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcagcgagcgcaggaccgtccgcgtgggcgagcgcaccctctcggtctccagc
ctggacaaggtgctctaccccgaggcgggcaccaccaaggccgacgtcgtgcactactac
ctgtcggtggccgaggtcctgctgccgcagctggcgggccgtccggtgacgcgcaagcgc
tgggtcgacggggtaggcacggagggcgacccgggggaggtgttcttccgcaaggacctg
gaggactcggcgccggactggatccccaccgggcggatcgtgcacgccaaccgggcgaac
tcctacccgctggccaccgaggcggcggtgttggcctggttcgcccaggtggcggcactg
gagctgcacaccccgcagtggcgcttcgggcccgacgggcagccccgccgccccgaccgg
ctggtgctggacctcgaccccggcgagggggtggggctgaccgagtgcgcccaggtggcg
cggtggtgccgcgaggtgctcgacggcatggcgctggaggccttccccgtgacctcgggg
tcgaagggcatccacctgtacgccgcgctcgacgggacgcacgatgccgaggcggtctcg
gcggtcgcccacgagctcgcgcgggccttggaggccgaccacccggacctcgtcgtctcc
accatgaagcgtgcccgccgggccgggaaggtgttcctggactggagccagaacaacgcc
tccaagaccaccgtggctccgtactcgttgcgcggccgcgcccggccgacggtggccgcc
ccccgtacgtgggaggagctcgacgacccgggcctcgcgcagctcgagctcgatgaggtg
ctcgaccgggtcgcggacggcatcgaccccgtcgcgagcctgggggcgggcacggggccc
gggggtgctggcgaggtgtcgtcgccggcgcccgaccggctgaggacctaccgctcgatg
cgggaccccgaccggaccgccgagccggtgccggccgacccgccgcgggagcgcgaggcg
ccggacggggagctgccgagcttcgtgatccaggagcaccacgccagcagcctgcactgg
gacttccggctggagcactccggcgtgctggtctcctgggccgtgcccaaggggccgccg
ctggagcacgacaccaaccggctggcggtcatgaccgaggaccacccgctggagtacggc
acgttcgagggcaccatcgccgcgggggagtacggcgccggcgaggtgaccatctgggac
gcgggcacctacgagcgcaagaagtggcgggagggcaaggaggtgatcgccgtcctgcac
ggccgccccgatggggggctcggcggggtgccacgccggttcgccctcatccaggccacc
ggcatgggcagcgagcgcaactggctgctgcgcctcaccgacgagcagcccggggcgggg
catccccaagacggttcccccgaggaggtgacggcggcaccgtcaccgagccggtcccgt
gctgaccggtcggactcgcgcaccgccagaagggccttgcgccggcggcccgcgccgggg
ttcaccgtggccgacctgccggcggcgatggcggccacggccgggaccccggagcaggtg
gagcgggcggtggccggcggccaggagtgggcgttcgagatgaagtgggacggctatcgc
gtggtcgcgggggtccggacggcggggcagggtcctgccgatgccgatgccgatgccgat
gccggtgccgagcgcgagggcgccgtcgtgcttgccagccgcaacggaaaggacctgacc
gacaccttccccgcggccgtcgaactcacccggctgctgcggggggaggcggccgagcgg
ggcggggccgtcctcgatggcgagctggtggcgttggacgaccggggccgccccgacttc
ggtctgctgcaggcggcgctcggcgacgggcccggcgtcaacgcggccggcgaccccatc
gagctgcgctatctcgtcttcgacctgctgcagctcggcgcgcccggggacccggaggac
cggcagcgctccctgctgcgcatcccctggggtgaacgacgcgagctcctgcgcgaggtg
ctgggtactggtggcgatgccgtgtcggtgccgccggcccacaccggcaccctcgcccag
gcgcagcgggcgagccgggggctggggctggagggggtcgtcgccaagcgggtcgatgcg
gtctatctgcccggccagcgcggttcggcgtgggtgaagctcaagacgcaacgccaccag
gaggtggtcgtcatcggggtccggcaggggcgcggcggccggtccggtggcatcgggtcg
ctgctggtggcggtgggggacgacgagggcgaactgcgctacgccggccgggtggggacg
ggcttcagcgccgcccagctggccgacatcgagaagacgctgcgccgcatcgagcgcaag
acgcccccggtggacgacgtgccggcggccgaccgcacggacgcctggtgggtgacgccg
cggctggtgggcgaggtgtccctggccgggcgcacgcgcgaccagcgggtgcggcaggcg
gtctggcgggggtggcgaccggacaaggaggccggcgaggtccgatgggaggtgtag
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