Kitasatospora setae: KSE_46630
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Entry
KSE_46630 CDS
T01648
Symbol
mfd
Name
(GenBank) putative transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ksk
Kitasatospora setae
Pathway
ksk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ksk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KSE_46630 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ksk03400
]
KSE_46630 (mfd)
Enzymes [BR:
ksk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KSE_46630 (mfd)
DNA repair and recombination proteins [BR:
ksk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KSE_46630 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
AAA_22
DUF4404
Motif
Other DBs
NCBI-ProteinID:
BAJ30444
NITE:
KSE_46630
UniProt:
E4NG14
LinkDB
All DBs
Position
5160823..5164431
Genome browser
AA seq
1202 aa
AA seq
DB search
MSLSGLLDVVVRDAALAEAIEAAATGHRQHLDLVGPPAARPFAIAALARSLAGRGGERGR
PVLAVTATGREAEDLAASLRSLLPADAVAEFPAWETLPHERLSPRSDTVGRRLAVLRRIV
HPRADDPAAGPVQVVVAPVRSVLQPQVKGLAELEPVALRTGERYDLGEVARRLAAAAYAR
VELVEKRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEIAEHGLWA
PPCRELLLTDQVRARAAELAAEHPELGEILDKIAQGIAVEGMESLAPVLVDDMELLLDVL
PAGSVAVVCDPERVRTRAADLVATSQEFLAASWVAAAAGADRPIDLEAIDVSAASLWSLA
DVREHAAGIGLPWWSVSPFATSDSAVSGVLERDADTLTLGMHAVEAYRGDTARAIADAKD
RLAADWRVVMVTEGHGPASRLAEVLGNEGIAARLVADLAEAPTRDVVYVSCGSIEHGFVD
EELKLTVVTETDLSGQKSSTKDMRRMPSRRRNAIDPLALAAGDYVVHEQHGVGRYVEMVQ
RTVQGATREYLVLEYAPAKRGHPGDRLFVPTDQLDQVTKYVGGEAPTLHRLGGADWAKTK
QRAKKAVKEIAADLIKLYSARMAAPGHAFGPDTPWQRELEDAFPYAETPDQLTTIGEVKA
DMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFSTFAERYA
NFPVNVRALSRFQTDTEAKAVLEGLFDGSVDVVIGTHRLFSSETRFKDLGLVIVDEEQRF
GVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYD
EKQISAAIRRELLREGQVFYIHNRVESIDKAAARLKELVPEARVATAHGQMGETQLEKVV
VDFWEKEFDVLVSTTIVESGIDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYM
LYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDL
YMRMVGEAVAEFRESLEGGGGEPEEEPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIAA
VNSEADIAQVREELTDRYGKLPEPVENLLLVAGLRLFARRCGIGDITLQGTFVRFGPVEL
RESQELRLNRLYPRTQVKATARQLLVPRPGSGGRIGGKPLVGRELLSWCAEFLGAMFEDL
RR
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgtccggactgctcgatgtcgtcgtacgggacgccgccctcgccgaggcgatc
gaggcggcggccacggggcacaggcagcacctcgaccttgtcggcccgcccgccgcccgg
ccgttcgcgatcgcggcgctggcccgctcgctggccggccgcggcggtgagcggggccgg
ccggtactggccgtgaccgccaccgggcgggaggccgaggacctggccgcctcgctgcgc
tcgctgctgcccgccgacgcggtcgccgagttcccggcctgggagacgctgccgcacgag
cggctctccccgcgctcggacaccgtcggccgccggctggcggtgctgcgccggatcgtc
cacccgcgcgccgacgacccggccgccgggccggtgcaggtggtggtcgccccggtgcgc
agcgtgctgcagccgcaggtgaagggcctggccgagctggagccggtggcgctgcgcacc
ggcgagcggtacgacctgggggaggtggcccgccggctggcggccgccgcctacgcccgg
gtcgaactggtcgagaagcgcggcgagttcgcggtgcgcggcggcatcctggacgtcttc
ccgccgaccgaggagcacccgctgcgggtggagttctggggcgacgacgtcgaggagatc
cgctacttcaaggtcgccgaccagcgctcgctggagatcgccgagcacggcctgtgggcg
ccgccctgccgggagctgctgctgaccgaccaggtgcgcgcgcgggccgccgaactggcc
gccgagcacccggagctgggcgagatcctggacaagatcgcgcagggcatcgcggtcgag
gggatggagtcgctggccccggtgctggtggacgacatggagctgctgctggacgtcctc
ccggccggctcggtcgccgtggtgtgcgacccggagcgggtccgcacccgggccgccgac
ctggtcgccaccagccaggagttcctggccgcgtcctgggtggccgcggcggcgggcgcc
gaccgcccgatcgacctggaggcgatcgacgtctcggccgcctcgctgtggtcgctggcg
gacgtccgcgagcacgcggcgggcatcggcctgccgtggtggtcggtcagcccgttcgcc
accagcgactccgccgtcagcggcgtcctcgaacgcgacgccgacaccctgaccctcggc
atgcacgccgtcgaggcgtaccggggcgacacggcgcgggcgatcgccgacgccaaggac
cggctggccgccgactggcgggtggtgatggtcaccgagggccacggcccggcctcccgg
ctggccgaggtgctcggcaacgagggcatcgcggcccggctggtcgccgacctcgccgag
gccccgacccgggacgtcgtctacgtgtcgtgcggctcgatcgagcacggcttcgtcgac
gaggagctgaagctcaccgtcgtcaccgagaccgacctgtccggccagaagtcctccacc
aaggacatgcgccggatgccgtcccgccgccgcaacgcgatcgacccgctggcgctggcg
gccggcgactacgtggtgcacgagcagcacggcgtcggccggtacgtcgagatggtgcag
cgcaccgtgcagggcgccacccgcgagtacctggtgctggagtacgcgcccgccaagcgc
ggccaccccggcgaccggctgttcgtgccgaccgaccagctcgaccaggtcaccaagtac
gtgggcggcgaggcgccgacgctgcaccggctcggcggcgcggactgggcgaagaccaag
cagcgggccaagaaggcggtcaaggagatcgccgccgacctgatcaagctgtactcggcc
cggatggcggcccccggccacgccttcggcccggacacgccgtggcagcgcgagctggag
gacgccttcccgtacgcggagacgcccgaccagctgaccaccatcggcgaggtcaaggcc
gacatggagaagtccgtcccgatggaccggctgatctgcggcgacgtcggctacggcaag
actgaaatcgcagtgagagcggccttcaaagccgtccaggacggcaagcaggtggcggtg
ctggtgccgaccacgctgctggtgcagcagcacttctcgaccttcgccgagcggtacgcg
aacttcccggtgaacgtgcgggcgctgtcccggttccagaccgacaccgaggcgaaggcg
gtgctggagggcctgttcgacggctcggtggacgtggtgatcggcacccaccggctgttc
tcctcggagaccaggttcaaggacctcggcctggtgatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctgcgggccaacgtggacgtgctgacgatg
tcggcgacgccgatcccgcgcaccctggagatggcggtcaccggcatccgcgagatgtcc
accatcaccaccccgccggaggagcggcacccggtgctgaccttcgtcggcccgtacgac
gagaagcagatctcggccgcgatccggcgcgaactcctgcgcgagggccaggtgttctac
atccacaaccgggtcgagtcgatcgacaaggcggccgcccggctgaaggagctggtgccg
gaggcccgggtggcgaccgcgcacgggcagatgggggagacccagctggagaaggtcgtc
gtcgacttctgggagaaggagttcgacgtgctggtctccaccaccatcgtggagtccggc
atcgacatctccaacgccaacaccctgatcgtcgagcgcggcgacaccttcggcctgtcc
cagctgcaccagctgcgcggccgggtcggccgcggccgcgagcgcggctacgcgtacatg
ctgtacccgccggagaagccgctcaccgagaccgcgcacgagcgcctggccaccatcgcc
cagcacaccgagatgggcgcgggcatgtacgtcgcgatgaaggacctggagatccgcggc
gccggcaacctgctcggcggcgagcagtccgggcacatcgcgggcgtcggcttcgacctc
tacatgcggatggtcggcgaggcggtcgccgagttccgcgagtcgctggagggcggcggc
ggggagccggaggaggagccgctggaggtgaagatcgagctgccggtcgacgcgcacgtc
ccgcacgactacgcgccgggggaacggctgcggctgcaggcgtaccgctcgatcgcggcg
gtcaactcggaggccgacatcgcgcaggtccgcgaggagctgaccgaccggtacggcaag
ctgcccgagccggtggagaacctgctgctggtggccgggctgcggctgttcgcccggcgc
tgcgggatcggcgacatcaccctgcagggcaccttcgtccggttcgggccggtcgaactg
cgggagtcgcaggagctgcggctgaaccggctctacccgcgcacccaggtcaaggccacc
gcccggcaactgctggtgccgcgccccggcagcggcggccggatcggcggcaagccgctg
gtcggccgggaactgctgtcctggtgcgccgagttcctgggtgccatgttcgaggacctc
aggcggtag
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integrated database retrieval system
