Kribbella soli: OG809_03435
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Entry
OG809_03435 CDS
T09724
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ksl
Kribbella soli
Pathway
ksl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ksl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OG809_03435 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ksl03400
]
OG809_03435 (mfd)
Enzymes [BR:
ksl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OG809_03435 (mfd)
DNA repair and recombination proteins [BR:
ksl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OG809_03435 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
AAA_22
CbiX
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WUJ72321
LinkDB
All DBs
Position
complement(691673..695302)
Genome browser
AA seq
1209 aa
AA seq
DB search
MNLTGLVDTLITDPVVSEAVRDARSDGVTTLDLSAPGPVRPVLLAAIAAAQTGADRPVLA
VTATFREAEELAEELQCLVEEPSTVAYYPAWETLPHERLSPRSDTVGRRLAVLRRLAHPD
PSDETTGPIKILVAPVRSVLQPQVAGLADLKPVQLHVGDSVELEDVVERLAGAAYHRVDL
VERRGEFAVRGGIIDVFPPTEEHPLRVDFFGDDIEEIRYFAVADQRSLDIAEHGLWAPPC
RELLLTDEVRSRAAELAKEHPELAELFEKLAEGHAVEGMESLAPVLVDNMELLVDLMPAG
THVIVSDPERVRARAHDLVATSQEFLEASWAAAAGGGEAPIDLGAAAYMALGDVRSQALG
RGLAWWSLSPFAAAPTDMPELRDSMGERISFDIDAEAGAVTSKILAVHEVDPYRGETAAA
AEDIRGWLRNGWRVVCVTEGHGPAQRLAEVFSEAELPARVVEGIEEIPEPGVVLISQGQL
DHGFIAEGIKFAVLTENDLAGQRSAAERRSQQRMPSRRKKTIDPLELQPGDYVVHEQHGV
GRYVEMMQRTVGSGSQKATREYVVIEFAPSKRGQPGDRLYVPTDQLDQVTRYVGGEQPTL
DKMGGGDWAKRKGRARKAVRQIAGELIKLYAARQATKGHAFAKDTPWQRELEDAFPFVET
PDQLATIDDVKHDMERVMPMDRIVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLV
QQHYATFAERYAAFPVNVAPLSRFQTDKEAKATIDGLADGSVDVVIGTHRLFSGEVAFKD
LGLVVVDEEQRFGVEHKEQLKRLRTAVDVLTMSATPIPRTLEMSITGIREMSTIATPPEE
RHPVLTFVGAYDEHQVTAAIRRELLREGQVFVVHNRVNTIEKAAARIRQLVPEARVSVAH
GQMNEHTLENVIQGFWEKQSDVIVCTTIVESGIDISNANTMIVERSDLLGLSQLHQLRGR
VGRGRERAYAYFFFPPEKPLTETAHDRLATIAQHADLGGGMAVAMKDLEIRGAGNLLGGE
QSGHIADVGFDLYVRLVGEAVAEYRGDTQAEEPEVKIEVPIDAHLPHDYIPSQRLRLEMY
QRLAAVRDEDGIAELVEELHDRYGDIPQAVLNLIEVAKFRNHARRAGLHDVTLQGNMIRF
GPVELPDSKVLRLNRLYPKSLVKPQLHTILVPRPATRPVGGQPLRDQELLQWCTRLIDDV
IAEPIVVPA
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
gtgaatctgaccggcctggtagacaccctgatcaccgatccggtggtgtccgaggccgtc
cgtgacgcccgcagcgacggtgtcacgaccctcgacctgagcgcgcccggcccggtccgc
ccggtcctgctcgccgcgatcgcagcagcacagaccggtgcggaccgcccggtcctcgcc
gtcacggccactttccgcgaggccgaggagctcgccgaggagctgcagtgcctcgtcgaa
gagcccagcacggtcgcctactacccggcgtgggagaccctcccgcacgagcgcctctcg
ccgcgttccgacacggtcggccggcgtctcgccgtactgcgacgtctcgcgcacccggat
ccgtccgacgagaccaccgggccgatcaagatcctggtcgcgcccgtgcggtccgtgctg
cagccgcaggtggccggcctggccgatctgaagccggtgcagctgcacgtaggtgactcg
gtcgagctcgaggatgtcgtcgagcggctcgccggagcggcgtaccaccgggtcgatctg
gtcgagcggcgtggtgagttcgcggtccgcggcggcatcatcgacgtgttcccgccgacc
gaggagcacccgctgcgggtcgacttcttcggcgacgacatcgaagagatccggtacttc
gcggtcgcggaccagcgctcgttggacatcgccgagcacggtctctgggcgccgccgtgc
cgcgagctgctgctgacggacgaggtccgttcgcgcgccgcggagctcgccaaggagcac
ccggagctggccgagctgttcgagaagctggccgaggggcacgccgtcgagggcatggag
tcgctggctccggtgctcgtcgacaacatggagctgctcgtcgacctgatgcccgccggc
acgcatgtcatcgtcagcgatcccgagcgcgtccgcgccagggcgcacgatctggtcgcg
accagccaggagttcttggaggcgtcgtgggccgcggccgccggtggtggcgaggccccg
atcgacctcggcgcagcggcgtacatggcgctcggtgacgtccggtcgcaggccctgggc
aggggcctggcctggtggagcctctcgccgttcgcggcggcgccgaccgacatgcctgag
ctgcgggactcgatgggcgagcggatctcgttcgacatcgacgccgaggccggggcggtc
accagcaagatccttgcggtccacgaagtcgatccgtaccgcggtgagacggcggccgcg
gccgaggacatccgcggctggctgcggaacggctggcgtgtcgtctgcgtcaccgaaggc
cacggtcccgcgcaacgtctggccgaggtgttctccgaggccgagctgccggcgcgtgtg
gtcgaagggatcgaggagatcccggagcccggcgtcgtactgatctcacaggggcagctg
gaccacgggttcattgccgagggcatcaagttcgccgtactcaccgagaacgacctggcc
gggcagcgatcggcggccgaacgccgttcccagcaacggatgccgtcgcgccggaagaag
accatcgacccactggagctgcagccgggcgactacgtcgtccacgagcagcacggcgtc
ggccggtacgtcgagatgatgcagcgcacggtcggatcgggctcccagaaggccacccgc
gagtacgtcgttatcgagttcgcgccgagcaagcgcggtcaacccggcgaccggctgtac
gtgccgaccgaccagctcgaccaggtcacgcggtacgtcggcggcgagcagccgacgctg
gacaagatgggcggcggcgactgggccaagcgcaagggccgcgcccgcaaggccgtccgc
cagatcgccggcgagctgatcaagctgtacgccgcacgccaggcgaccaaggggcacgcc
ttcgccaaggacaccccgtggcagcgcgagctcgaggacgcgttcccgttcgtcgagacg
ccggaccagctcgccacgatcgacgacgtcaagcacgacatggaacgcgtcatgccgatg
gaccggatcgtctgcggtgacgtcggctacggcaagaccgagatcgccgtacgggccgcg
ttcaaggcagtgcaggacggcaagcaggtcgccgtactggtgccgacgacgctcctcgtg
cagcagcactacgcgaccttcgccgagcggtacgccgccttcccggtgaacgtggctccg
ctgtcgcggttccagaccgacaaggaggcgaaggcaacgatcgacggcctggccgacggg
tcggtcgacgtggtgatcgggacgcaccggctgttcagcggcgaggtcgcgttcaaggat
ctcggcctggtcgtggtcgacgaggagcagcggttcggggtcgagcacaaggagcagctg
aagcggctgcggacggcggtcgacgtactgacgatgtccgcgacgccgatcccgcggacg
ctggagatgtcgatcaccggcatccgcgagatgtcgacgatcgcgaccccgccggaggag
cggcacccggtgctgaccttcgtcggcgcgtacgacgagcaccaggtgactgcggcgatc
cggcgcgagctgctccgcgagggccaggtcttcgtcgtccacaaccgggtgaacacgatc
gagaaggccgccgcgcggatccgtcagctggtgcccgaggcacgggtgtcggtcgcgcac
ggccagatgaacgagcacacgctcgagaacgtgatccagggcttctgggagaagcagtcc
gacgtgatcgtctgtacgacgatcgtcgagtccggtatcgacatctcgaacgcgaacacg
atgatcgtcgagcgttccgacctgctcggcctgtcgcagctgcaccagctccgcggtcgc
gtcggtcgtggccgcgagcgtgcgtacgcgtacttcttcttcccgccggagaagccgctc
accgagaccgcgcacgaccggctggccacgatcgcgcagcacgccgatctgggcggcggt
atggcggtcgcgatgaaggacctcgagatccgcggcgcgggcaacctgctcggcggcgaa
cagtccgggcacatcgcggacgtcggattcgacctgtacgtccggctcgtcggcgaggcg
gtcgcggagtaccgcggcgacacccaggccgaggagcccgaggtcaagatcgaggtgccg
atcgacgcgcacctgccgcacgactacatcccgtcgcagcggctgcggctcgagatgtac
cagcggctggccgcagtacgcgacgaggacggtatcgccgagctggtcgaggagctgcac
gaccggtacggcgacattccgcaggccgtgctgaacctgatcgaggtggcgaagttccgc
aaccacgcccgccgggcggggctgcacgacgtcacgctgcaggggaacatgatccggttc
gggccggtcgagctgcccgattcgaaggtgctcaggctcaacaggctgtacccgaagagt
ctggtgaagccgcaactgcataccattctggtgccgagacctgccaccaggccggtcggc
ggtcagccgctccgggaccaggagttgctgcaatggtgcacccggttgatcgacgacgtg
atcgccgaacctattgtggtgccggcgtga
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