Kutzneria sp. CA-103260: JJ691_69670
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Entry
JJ691_69670 CDS
T08943
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kut
Kutzneria sp. CA-103260
Pathway
kut03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JJ691_69670 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kut03400
]
JJ691_69670 (mfd)
Enzymes [BR:
kut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JJ691_69670 (mfd)
DNA repair and recombination proteins [BR:
kut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JJ691_69670 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QUQ69212
LinkDB
All DBs
Position
complement(7928591..7932166)
Genome browser
AA seq
1191 aa
AA seq
DB search
MTQPGRLSGLLTAVLADKSLREALGAVGAPRLELEGPPAGRSLLVAALATERPVLAITAT
GREAEELGAIAKDLLGDGAVELFPSWETLPHERLSPRADTVGRRLEVLRRLAHPEEHPAG
QVKVVVATVRSLIQPMAPSLGELAPVHLAVGAEHDFEQLVERLAELAYVRVDMVEKRGEF
AVRGGILDVFPPTSEHPVRVEFWGDEVSEIRPFSVADQRSLPGEIQAFTAPPCRELLLTD
DVKAKAAELAAEHQADAQLAEMLDKLSNGIAVEGMEALIPALCRGELQLLTEVVPAGTIV
LVNDPEKIRTRAQDLVRTGQEFLEASWMAAAGGGKAPIDLGASAYRALADVATTTVDSGR
SWWTLSQLTTDAEGVLRLDIAPVEAYRGDVDRAFTDLRAHAAAGGTAVLVVPGTGTAQRA
VEQMAEAEVPARLAENGLSEAPEPGVVTVARGSLEDGFLASGLSLVVITETDLTGGRGGT
STRDMRKMPSRRRNAVDPLALKPGDYVVHEQHGIGRYVEMVQRTVAGATREYLVLEYAAS
KRGQPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKAKKAVKQIAAELVQLY
AARQSAPGHAFGPDTPWQRELEDAFPFTETADQLAAIDEVKGDMERAVPMDRVICGDVGY
GKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFSERMRQFPVNVRGLSRFTDPLES
EKVVAGLADGEVDIVIGTHRLLQTGLRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVL
TMSATPIPRTLEMSLAGIREMSTILTPPEERHPILTYVGAYDDKQVGAAIRRELLRDGQV
FFVHNRVSSIERAARRLRELVPEARVATAHGQMNEERLEKIIEGFWEREFDVLVCTTIVE
TGLDISNANTLIVERGDMLGLAQLHQLRGRVGRARERGYAYFLYPPDGTLTETAHDRLAT
IAQNTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVEAFRKSAGA
PSEEDGEELAEVRVDLPIDAHIPHDYVPGERLRLEAYRKIAAAVDDAALAAVKEELQDRY
GQPPAPVERLLAVARFRQTCRRLGVTEVATQASSIRFAPMELLDSQLVRMKRLYPKATYK
AATHIVSVPRPTEGPAGGRIGAPPLRDTELLDWCAHFVESLIGNPKPVVAG
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
gtgacccagcccggccgactgtccggtctgctgaccgccgtgctcgcggacaagtcgctg
cgtgaggcgctgggggcggtgggagcgccgcgcctggagttggaggggccgccggcgggc
cggtcgctgctggtggcggcgctggccacggagcggccggtgctggcgatcacggcgacg
ggccgagaggccgaagagttgggggcgatcgccaaggacctgctgggagacggggcggtg
gagctgttcccgtcctgggagacgctgccgcacgagcggctgtcgccccgggcggacacg
gtgggtcgacggctggaagtgctcaggcggctggcccacccggaggagcacccggccggc
caggtgaaggtggtcgtggccacggtccgcagcctgatccagccaatggccccgagcctg
ggcgagctggccccggtgcacctggcggtcggcgcggagcacgacttcgagcagctggtg
gagcgcctggccgagctggcctacgtccgcgtggacatggtggagaagcgcggcgagttc
gcggtccgcggcggcatcctggacgtcttcccaccgacctcggagcacccggtccgggtg
gagttctggggcgacgaggtgagcgagatccggccgttctcggtggccgaccagcggtcg
ctgccgggcgagatccaggccttcacagccccgccctgccgagagctgctgctgaccgac
gacgtcaaggcgaaggcggcggagctggcggccgagcaccaggccgacgcgcagctggcg
gagatgctggacaagctgtccaacggcatcgcggtggagggcatggaggcgctgatcccg
gcgctgtgccgaggcgagctccagctgctcacggaggtcgtgccggccggcacgatcgtg
ctggtcaacgacccggagaagatccgcacccgggcccaggacctggtccgcaccggccag
gaattccttgaggcgtcgtggatggcggcggcgggcggcggcaaggccccgatcgacctg
ggggcctcggcctaccgggcgttggccgacgtcgcgacgaccacagtggacagcggccgc
tcctggtggacgctgagccagctcaccaccgacgcggaaggcgtgctgcgcctggacatc
gcgccggtggaggcctaccggggcgatgtggaccgggccttcaccgatctgcgcgcgcac
gcggcggccggcggcacggcggtgctggtggtgccgggaaccggcacggcgcagcgggcc
gtggagcagatggccgaggcggaggtgccggcccggctcgcggagaacggcctgagcgag
gccccggagccgggcgtggtgacggtcgcccgcggctccctggaggacggcttcctggcc
agtggcctgagcctggtggtgatcaccgagaccgacctgaccggcggtcgcggcggcacg
tccactcgggacatgcgcaagatgccgtcccgccgccgcaacgcggtcgacccgctggcc
ctcaagcccggcgactacgtggtgcacgagcagcacggcatcggccgctacgtggagatg
gtgcagcgcacggtggccggcgccacccgcgagtacctggtgctggagtacgcggccagc
aagcgcggccagcccggcgaccgcctgttcgtgccgaccgaccagctcgacgaggtctcc
cgctacgtcggcggcgagctgcccacgttgaacaagctcggcggctcggactggaagaac
accaaggccaaggccaagaaggcggtcaagcagatcgccgccgagctggtgcagctgtac
gcggcccggcagtccgcgcccggccacgccttcggcccggacacgccgtggcagcgcgag
ctggaggacgccttcccgttcaccgagacggccgaccagctggcggccatcgacgaggtg
aagggggacatggagcgcgcggtcccgatggaccgggtgatctgcggcgacgtcggctac
ggcaagaccgagatcgccgtccgggccgcgttcaaggcggtgcaggacggcaagcaggtg
gcggtgctggtgccgaccacgctgctggcccagcagcacctcaacacgttcagcgagcgg
atgcggcagttcccggtcaacgtccggggcctgtcccggttcaccgacccgctggagtcg
gagaaggtggtggccgggctggccgacggcgaggtggacatcgtcatcggcacccaccgg
ctgctgcagaccggcctgcgctacaaggacctcggcctggtcatcgtggacgaggagcag
cgcttcggcgtcgagcacaaggagcacatcaaggccctgcgcacgcacgtggacgtgctg
accatgtcggccaccccgatcccgcggaccctggagatgagcctggccggcatccgcgag
atgtccaccatcctcaccccgcccgaggagcggcacccgatcctcacctacgtcggcgcc
tacgacgacaagcaggtcggcgcggccatccgccgcgagctgctgcgcgacggccaggtc
ttcttcgtgcacaaccgggtgtcctcgatcgagcgggccgcccgccggctgcgcgagctg
gtgccggaggcccgggtggccaccgcgcacggccagatgaacgaggagcgcctggagaag
atcatcgagggcttctgggagcgcgagttcgacgtcctggtctgcaccacgatcgtcgag
accggcctggacatctccaacgccaacacgctgatcgtggagcgcggcgacatgctcggc
ctggcccagctgcaccagctgcgcggccgggtcggccgggcccgcgagcgcggctacgcc
tacttcctgtacccgccggacggcacgctcaccgagaccgcgcacgaccggctggccacc
atcgcccagaacaccgagctcggcgcgggcatggcggtggcgatgaaggacctggagatc
cgcggcgccggcaacatcctgggcgccgagcagtccggacacatcgccggcgtcggcttc
gacctctatgtccgcttggtcggcgaggccgtggaggcgttccgcaagagcgccggcgcg
ccgagcgaggaggacggcgaggagctggccgaggtccgggtcgacctgcccatcgacgcg
cacatcccgcacgactacgtgccgggggagcggctgcggctggaggcctaccgcaagatc
gcggccgccgtcgacgacgcggcgctggcggcggtcaaggaagagctccaggaccgctac
ggccagccgccggccccggtggagcggctgctggcggtggctcggttccgccagacctgc
cgccgcctcggcgtcaccgaggtggccacccaggccagctccatccggttcgcgccgatg
gagctgctggactcgcagctggtccggatgaagcggctgtacccgaaggcgacgtacaag
gcggccacccacatcgtgtcggtgccccgcccgaccgagggcccggccggcggccggatc
ggcgcgccgccgctgcgggacaccgagttgctggactggtgtgcccacttcgtcgagtcg
ctgatcggaaatcccaagccggtagtggctggttga
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