Kocuria varians: CIB50_0001388
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Entry
CIB50_0001388 CDS
T06882
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kvr
Kocuria varians
Pathway
kvr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CIB50_0001388 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kvr03400
]
CIB50_0001388 (mfd)
Enzymes [BR:
kvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CIB50_0001388 (mfd)
DNA repair and recombination proteins [BR:
kvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CIB50_0001388 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QMS56674
UniProt:
A0A7D7PS35
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All DBs
Position
1570864..1574640
Genome browser
AA seq
1258 aa
AA seq
DB search
MSLTGLLTALSEDRGFANIRTQASRTLAERSAETIISATDGLRAPVLAQIASGLEQARGA
VSGGAASNGSSSDGAAAPVLLAVTATGREAEQVQAALESYLPAGSIANFPSWETLPHERL
SPRSDTVGQRLGVLRRLAHPDATAEPLRVVVAPVRSVLQPVVAGLGEMEPVTLRTGRDYD
FQGLVKDLAAAAYARVDMVTKRGEFAVRGGIVDVFPPTEDHPVRLEFFGDELDEMRWFAV
ADQRTLTDAAHPSVVVAPPCRELLVTPSVQSRAAKLKEQLPGGREMLERIAGGQYVEGME
SLAPLLADDMVQVLSLLPEGSMTVVLEPEKVRARAHDLVATNEEFLMAAWESASGGNDAP
LDLNTALDTDDGATRSLSSGSFHTIAEVRELALDRSVGWWSVTGLNVNAVTASQIDADTS
EEEVHLADTDADTLTVGGREPTRFAGDVEAMLSFLAQRVREEWRVVLVTDGPGPLQRLSE
LLHGAEIPAARYETLTESPQPGLVELTTARAGRGFVLEATRTALLTEADVLGRASTYDTR
AERRLPQRRKRNQVDPLALQKGDYVVHEQHGIGQFVELVQRPIAGAMTVPGQPKPVREYL
VLDYAPSKRNGPRDRLFVPTDQLDQVSSYVGGEAPSLSKMGGADWSKTKRSAKKAVKEIA
NELIRLYSARMASKGHAFGPDTPWQRELEQAFPYVETPDQLTTIDEVKADMERPIPMDRL
ISGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHTETFAERFSGFPVRLTTLSR
FQSAKESKATMEGLRSGAVDVVIGTHRLLSKEMQFKNLGLVIIDEEQRFGVEHKEKLKAM
RTDVDVLAMSATPIPRTLEMSMTGIRETSTLATPPEERHPVLTYVGPYTNKQVSAAVRRE
LMREGQVFFIHNRVSTIEARAKELAELVPEARIAVAHGQMSESRLEQIIVDFWEKKFDVL
ICTTIVETGLDIANANTLIVDHADRYGLSQLHQLRGRVGRGRERAYAYFLYPAEKPLSET
ALERLKAVAAHNELGSGMQLAMKDLEIRGAGNLLGGEQSGHIAGVGFDMYLRLVGEAVAE
YRGDQETGPAEMKIELPVNAHLPHDYVPGERLRLEAYRTLANAATEQAVVEAAEELEDRY
GPVPTPVANLLEVARLRIRARAAGLTDVATQGNMIRFSPADLTESREMRLQRLYPGSQVR
PVPGTDARMALIPKPKTARIGGKDLVDGDILAWSREVLDAVFPVLETAGSGSEAGPAS
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgaccggtctgctcaccgcactgtccgaggaccgcggtttcgccaacatccgt
acgcaggcgtcacgcaccctcgcggagcgctcggcggagacgatcatcagcgccacggac
gggttgcgcgcccccgtgctcgcgcagatcgcgagcggcctggagcaggcgcgcggagct
gtctccggcggggcggcgtcgaacggttcgtcgtctgacggcgcggctgcgccggtgctg
ctcgccgtgaccgccaccgggcgcgaggcggagcaggtgcaggccgcgctcgagtcctac
ctgccggccgggagcattgcgaacttcccgtcctgggagacgctgccgcacgagcggctc
tccccgcgctcggacacggtgggccagcgcctgggcgtgctgcgccgactcgcccacccg
gacgccaccgcggagcccctgcgcgtggtcgtggccccggtgcgctcggtgctgcagccg
gtggtcgccgggctcggcgagatggagcccgtgacgctgcgcacggggcgggactacgac
ttccaggggctcgtgaaggacctcgccgccgccgcgtacgcgcgcgtggacatggtcacc
aagcgcggagagttcgcggtgcgcggcgggatcgtggacgtcttcccgcccaccgaggac
caccccgtgcgcctggagttcttcggggacgagctggacgagatgcgctggttcgccgtc
gcggaccagcgcacgctcacggacgcggcccacccgagcgtcgtcgtggccccgccctgc
cgcgagctgctcgtgacgccgtccgtccagtcgcgcgccgccaagctcaaggagcagctg
cccggtggccgcgagatgctggagcgcattgccggggggcagtacgtggagggcatggag
tccctcgcgccgctgctcgcggacgacatggtccaggtgctgtccctgctgccggagggc
tccatgaccgtggtgctggaaccggagaaggtccgggcccgcgcgcacgacctcgtggcc
accaacgaggagttcctcatggccgcgtgggagtccgcgtccggcggcaacgacgcgccc
ctggacctgaacaccgcgctggacacggacgacggcgccacccgctccctgtcctccggc
tccttccacacgattgccgaggtgcgcgagctcgccctcgaccgctcggtgggctggtgg
tccgtcacgggcctcaacgtcaacgccgtgaccgcctcccagatcgacgccgacacctca
gaggaagaggtgcacctcgcggacacggacgcggacaccctcaccgtgggtggacgcgag
cccacccggttcgccggggacgtggaggccatgctcagtttccttgcccagcgcgtgcgc
gaggagtggcgcgtggtgctcgtgacggacgggcccgggcccctgcagcggctgagcgag
ctgctgcacggcgcggagatccccgcggcacgctacgagaccctcaccgagagcccgcag
ccggggctcgtggagctgacgacggcgcgcgcgggtcgaggcttcgtgctcgaggccacg
cgcaccgccctcctgacggaggcggacgtgctcggccgggcgagcacctacgacacccgc
gcggagcgcaggcttccgcagcggcgcaagcgcaaccaggtggatcccctggccctgcag
aagggcgactacgtggtgcacgagcagcacggcatcggccagttcgtggagctcgtccag
cgcccgatcgccggtgcaatgaccgtcccgggccagcccaagcccgtgcgcgagtacctg
gtgctggactacgcgccgtccaagcgcaacggtccgagggaccggctgttcgtgcccacg
gaccagctcgaccaggtgagcagctacgtgggcggtgaggcaccgtcgctgtccaagatg
ggcggtgcggactggagcaagaccaagcgcagcgccaagaaggccgtcaaggagatcgcg
aacgagctgatccggctctactcggcgcgcatggcctccaagggccacgcgttcggcccg
gacaccccctggcagcgcgagctggagcaggcgttcccgtacgtggagacaccggaccag
ttgaccaccatcgacgaggtcaaggcggacatggagcggcctatccccatggatcggctg
atctccggagacgtgggctatggcaagaccgaggtggcggtgcgcgcggcgttcaaggcc
gtgcaggacggcaagcaggtggcggtgctcgtgcccaccacgctgctcgcccagcagcac
accgagacctttgctgagcgcttctcgggcttccccgtgcgcctgacaaccctctcccgg
ttccagagcgccaaggagtccaaggccaccatggaggggctgcgcagcggcgcggtggac
gtggtgatcggcacccaccggctgctgagcaaggagatgcagttcaaaaacctggggctg
gtgatcatcgacgaggagcagcgcttcggcgtggagcacaaggagaagctcaaggccatg
cgcacggacgtggacgtgctggcgatgtccgccacgcccatcccgcgcacgctggagatg
tccatgacgggcatccgcgagacctccacgctggccaccccgccggaggagcgccacccc
gttctcacgtacgtgggtccctacacgaacaagcaggtctcggccgcggtgcgccgcgag
ctcatgcgtgaggggcaggtgttcttcatccacaaccgggtgtccaccatcgaggcgcgg
gcgaaggagctcgcggagctcgtcccggaggcgcggatcgccgtcgcccacggccagatg
agcgagtcccgcctggagcagatcatcgtggacttctgggagaagaagttcgacgtgctg
atctgcaccaccatcgtggagaccggcctggacatcgccaacgcgaacacgctgatcgtg
gaccacgcggaccgctacgggctctcgcagctgcaccagctgcgcggtcgcgtgggccgc
ggccgtgagcgggcctacgcctacttcctgtacccggcggagaagccgctgagcgagacc
gcgctggagcggctcaaggccgtggccgcccacaacgagctcggctccggcatgcagctg
gccatgaaggacctcgagatccgcggcgccggcaacctgctgggcggcgagcagtccggg
cacatcgccggcgtgggcttcgacatgtacctgcgtctcgtgggcgaagccgtggccgag
taccgcggggaccaggagaccgggcccgcggagatgaagatcgagctgcccgtcaacgcg
cacctgccgcacgactacgtgccgggggagcggctgcgcctggaggcctaccgcaccctg
gccaacgccgccacggagcaggccgtcgtggaggccgcggaggagctcgaggaccgctac
ggtcccgtgcccaccccggtcgccaacctcctggaggtcgcccggctgcggatccgcgcc
cgtgccgcgggcctcacggacgtggccacgcaggggaacatgatccgcttctcgcccgcg
gacctcaccgagtcccgcgagatgcgcctgcagcgcctctacccgggctcccaggtccgc
cccgtgccgggcaccgacgcgcgcatggcgctgatccccaagcccaagacggctcggatc
ggcggcaaggacctcgtggacggggacatcctcgcctggtcgcgggaggtgctggacgcg
gtcttcccggtgctcgagacggcggggtccggttccgaggccggacccgcttcctag
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