Kocuria varians: CIB50_0001390
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Entry
CIB50_0001390 CDS
T06882
Symbol
rfbC
Name
(GenBank) putative dTDP-4-dehydrorhamnose 3,5-epimerase
KO
K23987
dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:
5.1.3.13
1.1.1.133
]
Organism
kvr
Kocuria varians
Pathway
kvr00521
Streptomycin biosynthesis
kvr00523
Polyketide sugar unit biosynthesis
kvr00541
O-Antigen nucleotide sugar biosynthesis
kvr01100
Metabolic pathways
kvr01110
Biosynthesis of secondary metabolites
kvr01250
Biosynthesis of nucleotide sugars
Module
kvr_M00793
dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
CIB50_0001390 (rfbC)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
CIB50_0001390 (rfbC)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
CIB50_0001390 (rfbC)
Enzymes [BR:
kvr01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.133 dTDP-4-dehydrorhamnose reductase
CIB50_0001390 (rfbC)
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.13 dTDP-4-dehydrorhamnose 3,5-epimerase
CIB50_0001390 (rfbC)
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GFIT
Motif
Pfam:
RmlD_sub_bind
dTDP_sugar_isom
Epimerase
GDP_Man_Dehyd
NAD_binding_4
Polysacc_synt_2
Motif
Other DBs
NCBI-ProteinID:
QMS56676
UniProt:
A0A7D7PZ30
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All DBs
Position
1575886..1577325
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AA seq
479 aa
AA seq
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MTAQEITVHESGIDGLLFVDLPVHGDNRGWFKENWQRAKAVAAGLPDASFVQQNISFNGT
RGTTRGIHAEPWDKYVSVATGRIFGAWVDLREGPGFGTVLTREITPATAVFVPRGVGNAF
QTLEDATAYAYLVTDHWRADAGDEYSFVNLGDPHLGIEWPVPLADAELSAKDRAHPPLDD
VAPLPPAPVLVLGARGQVGLALTALLTETGVPFTAWTRDELDLADPASWPDEVRSGGGLR
RYRAVVNAAAFTAVDAAETDEGREEAWAVNASGVAALAAACSRARVTLVHLSTDYVLDGA
LPLGSSYEPDSPVAPVSVYGQSKAAGEMAVRTCSRHYVVRTSWVIGEGKNFVATMARLAE
QGVDPTVVDDQHGRLTGAADLAAGILHLLDTRAPYGTYHLTGSGEPCTWADVARWVFEDL
GHDPDRVTPVSTAEYTAGRAPGAPRPTNSVLDISAVLNAGFTPQDSRAVARQGAMAFGD
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
gtgacggcacaggagatcacggtccacgagagcgggatcgacggcctgctgttcgtggac
ctgcccgtccacggggacaaccgcgggtggttcaaggagaactggcagcgcgccaaggcc
gtggccgcgggcctgccggacgcgtccttcgtgcagcagaacatctccttcaacgggacg
cgcggcaccacgcgcggcatccacgcggagccgtgggacaagtacgtctcggtggccacc
ggtcggatcttcggcgcgtgggtggacctgcgcgaggggccgggcttcggcacggtcctc
acgcgggagatcaccccggcgacggcggtgttcgtgccccgcggcgtgggcaacgcgttc
cagacgctggaggacgccacggcctacgcgtacctggtcaccgaccactggcgcgcggac
gcgggggacgagtactcgttcgtgaacctgggggacccgcacctgggcatcgagtggccg
gttccgctcgcggacgcggagctctcggccaaggatcgcgcgcacccgcccctcgacgac
gtcgccccgctgcctccggcgcccgtgctcgtcctgggtgcccgcggccaggtggggctc
gccctgaccgcgctgctgacggagaccggcgtgcccttcaccgcctggacccgtgacgag
ctggacctcgcggaccccgcctcctggcccgacgaggtgcgctccgggggcgggctgcgt
cgctaccgtgccgtggtcaacgccgccgccttcaccgctgtcgacgccgccgagacggac
gagggacgcgaggaagcgtgggcggtcaatgcctcgggagtcgccgcactggccgcagcg
tgctcccgggccagggtgacgctcgtgcacctgtccacggactacgtcctcgacggcgcc
ctcccgctcggctcctcgtacgagcccgactcaccggtggcaccggtgtccgtgtacggg
cagtcgaaggcggcgggggagatggccgtgcgcacgtgctcccggcactacgtggtgcgc
accagctgggtcatcggtgaggggaagaacttcgtggcgaccatggcgcgcctggccgag
cagggggtggaccccaccgttgtcgacgaccagcacgggcggctcaccggcgccgccgat
ctcgccgcgggcatcctgcacctgctggacacccgcgccccgtacggcacgtaccacctg
acgggctcaggggagccgtgcacgtgggcggacgtggcccgctgggtgttcgaggacctc
ggccacgacccggacagggtcacgcccgtcagcaccgcggagtacacggcggggcgggca
cccggtgcgccgcggccaacgaacagcgtgctcgacatttccgcggtcctgaacgcgggc
ttcaccccgcaggacagtcgcgcggtggctcgtcagggcgcgatggcgttcggcgactga
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