KEGG   Kocuria varians: CIB50_0001390
Entry
CIB50_0001390     CDS       T06882                                 
Symbol
rfbC
Name
(GenBank) putative dTDP-4-dehydrorhamnose 3,5-epimerase
  KO
K23987  dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
Organism
kvr  Kocuria varians
Pathway
kvr00521  Streptomycin biosynthesis
kvr00523  Polyketide sugar unit biosynthesis
kvr00541  O-Antigen nucleotide sugar biosynthesis
kvr01100  Metabolic pathways
kvr01110  Biosynthesis of secondary metabolites
kvr01250  Biosynthesis of nucleotide sugars
Module
kvr_M00793  dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:kvr00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00541 O-Antigen nucleotide sugar biosynthesis
    CIB50_0001390 (rfbC)
  09109 Metabolism of terpenoids and polyketides
   00523 Polyketide sugar unit biosynthesis
    CIB50_0001390 (rfbC)
  09110 Biosynthesis of other secondary metabolites
   00521 Streptomycin biosynthesis
    CIB50_0001390 (rfbC)
Enzymes [BR:kvr01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.133  dTDP-4-dehydrorhamnose reductase
     CIB50_0001390 (rfbC)
 5. Isomerases
  5.1  Racemases and epimerases
   5.1.3  Acting on carbohydrates and derivatives
    5.1.3.13  dTDP-4-dehydrorhamnose 3,5-epimerase
     CIB50_0001390 (rfbC)
SSDB
Motif
Pfam: RmlD_sub_bind dTDP_sugar_isom Epimerase GDP_Man_Dehyd NAD_binding_4 Polysacc_synt_2
Other DBs
NCBI-ProteinID: QMS56676
UniProt: A0A7D7PZ30
LinkDB
Position
1575886..1577325
AA seq 479 aa
MTAQEITVHESGIDGLLFVDLPVHGDNRGWFKENWQRAKAVAAGLPDASFVQQNISFNGT
RGTTRGIHAEPWDKYVSVATGRIFGAWVDLREGPGFGTVLTREITPATAVFVPRGVGNAF
QTLEDATAYAYLVTDHWRADAGDEYSFVNLGDPHLGIEWPVPLADAELSAKDRAHPPLDD
VAPLPPAPVLVLGARGQVGLALTALLTETGVPFTAWTRDELDLADPASWPDEVRSGGGLR
RYRAVVNAAAFTAVDAAETDEGREEAWAVNASGVAALAAACSRARVTLVHLSTDYVLDGA
LPLGSSYEPDSPVAPVSVYGQSKAAGEMAVRTCSRHYVVRTSWVIGEGKNFVATMARLAE
QGVDPTVVDDQHGRLTGAADLAAGILHLLDTRAPYGTYHLTGSGEPCTWADVARWVFEDL
GHDPDRVTPVSTAEYTAGRAPGAPRPTNSVLDISAVLNAGFTPQDSRAVARQGAMAFGD
NT seq 1440 nt   +upstreamnt  +downstreamnt
gtgacggcacaggagatcacggtccacgagagcgggatcgacggcctgctgttcgtggac
ctgcccgtccacggggacaaccgcgggtggttcaaggagaactggcagcgcgccaaggcc
gtggccgcgggcctgccggacgcgtccttcgtgcagcagaacatctccttcaacgggacg
cgcggcaccacgcgcggcatccacgcggagccgtgggacaagtacgtctcggtggccacc
ggtcggatcttcggcgcgtgggtggacctgcgcgaggggccgggcttcggcacggtcctc
acgcgggagatcaccccggcgacggcggtgttcgtgccccgcggcgtgggcaacgcgttc
cagacgctggaggacgccacggcctacgcgtacctggtcaccgaccactggcgcgcggac
gcgggggacgagtactcgttcgtgaacctgggggacccgcacctgggcatcgagtggccg
gttccgctcgcggacgcggagctctcggccaaggatcgcgcgcacccgcccctcgacgac
gtcgccccgctgcctccggcgcccgtgctcgtcctgggtgcccgcggccaggtggggctc
gccctgaccgcgctgctgacggagaccggcgtgcccttcaccgcctggacccgtgacgag
ctggacctcgcggaccccgcctcctggcccgacgaggtgcgctccgggggcgggctgcgt
cgctaccgtgccgtggtcaacgccgccgccttcaccgctgtcgacgccgccgagacggac
gagggacgcgaggaagcgtgggcggtcaatgcctcgggagtcgccgcactggccgcagcg
tgctcccgggccagggtgacgctcgtgcacctgtccacggactacgtcctcgacggcgcc
ctcccgctcggctcctcgtacgagcccgactcaccggtggcaccggtgtccgtgtacggg
cagtcgaaggcggcgggggagatggccgtgcgcacgtgctcccggcactacgtggtgcgc
accagctgggtcatcggtgaggggaagaacttcgtggcgaccatggcgcgcctggccgag
cagggggtggaccccaccgttgtcgacgaccagcacgggcggctcaccggcgccgccgat
ctcgccgcgggcatcctgcacctgctggacacccgcgccccgtacggcacgtaccacctg
acgggctcaggggagccgtgcacgtgggcggacgtggcccgctgggtgttcgaggacctc
ggccacgacccggacagggtcacgcccgtcagcaccgcggagtacacggcggggcgggca
cccggtgcgccgcggccaacgaacagcgtgctcgacatttccgcggtcctgaacgcgggc
ttcaccccgcaggacagtcgcgcggtggctcgtcagggcgcgatggcgttcggcgactga

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