Kyrpidia spormannii: CVV65_00395
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Entry
CVV65_00395 CDS
T05215
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kyr
Kyrpidia spormannii
Pathway
kyr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CVV65_00395 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kyr03400
]
CVV65_00395 (mfd)
Enzymes [BR:
kyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CVV65_00395 (mfd)
DNA repair and recombination proteins [BR:
kyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CVV65_00395 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_30
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ATY86331
UniProt:
A0A2K8NAI1
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All DBs
Position
68550..72023
Genome browser
AA seq
1157 aa
AA seq
DB search
MEGLDERIEEQWVTGLSGTAAHVMMAALRRETGKPMLIVTHNLQEAQQLYDDCLEFLPND
RVLLFPEREAALLDVAAYSPELAAERMDVLTRLAKGENILLIAPARAVDQPLPDLEIFRS
FLLSIKAGDVLKRDEWVDRLLQMGYEAADRVEARGQLAVRGGIVDVFPLTHERAYRIEFF
DDEIDAIRVFDPETQRSVDQVTACEIGPNTEVLAPKERIQAVARVVRSQWERQREKFADE
GHRERVDRYIGEDVRRMETGYPFTGLLRYIHLLYPRPGGLLTWMPVDAICVYAEPIRIRD
SLKQREREEQEWELHGLEKGELLSGLHRPTMAGDAGLSGHRQRVLFSLLARHTAANRRVI
SVPARSMQQFHGQMNVLKQEWDRWCRTGQRVVLVAANGERAERLRRVLEDYGMSADLTSE
WSKQANRPQIVLGGISSGFEMPDLKLVVVTEQEIFTAKRRHRRVSTVSDAERIKNYQDLK
VGDYVVHVNHGIGQYMGIQTLEIEGIHKDYLYIRYAGNDKLYVPIDQIDQVQKYIGGEDK
QPKLYHLGGTEWAKVKNRVRSSIRDIAEELVKLYAQRMASPGHAFSPDTPWQKEFEAMFP
YRETPDQLKAIEEIKRDMEQPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVPT
TVLAQQHYETFRERFHGFPISIDVVSRFRTRGEMSQVLKQLRAGTVDIIIGTHRLLQKDV
KFKDLGLLIVDEEQRFGVTHKERLKQLKTNVDCLTLTATPIPRTLHMSMLGVRDLSIIET
PPENRFPVQTYVLEYDDLLAKEAIEREIGRGGQVYFLYNKVQDIEQMADHVRRLVPDAKV
AVAHGQMPEDHLELVMLEFLHGEHDVLVTTTIIETGLDIPNVNTLIVYDADHLGLSQLYQ
LRGRVGRSNRIAYAYFTYQPEKVLTEVAEKRLQAIKEFTELGSGFKIALRDLSIRGAGNL
LGPEQHGFIASVGFDLYSDMLADAIRELKGESLPQVVEPQVELAVDAYLPERYIPDSMQK
IEIYKKFVSCRRLEDVDDLQEEIEDRFGDIPQEVLNLLAVTRIKIWAIRHDFKSISQQGS
EVTLKLHERQNKHVQGDRLFDLTKRFRERIKLTAGQNITMTLRMRGLTAEQSLKLLLEFM
EAFQDVVKGQEELQNVL
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcctggatgagcggatagaagagcaatgggtcacggggttgtccgggacggcg
gcgcacgtcatgatggctgcgctacggcgggaaaccggcaagccgatgctcatcgttacc
cataatcttcaggaagcacaacagttgtatgatgattgtcttgaatttcttccgaacgac
cgcgttctcctgtttcccgaacgcgaggcggcgctgctcgatgtggcggcttacagtccg
gaactcgcggccgagcgcatggacgttttgacgcgattggcgaagggagaaaacatcctg
ttgatcgctccggcccgggcagtggaccagccccttccagatctcgaaatattccgttcc
ttcctcctgtctataaaggccggagacgttttaaaaagggatgaatgggtggatcggctc
ctccagatggggtatgaagccgccgatcgagtggaagcgcgagggcaattggcagtccgg
ggcggcatcgtcgacgtttttcccctcacgcacgaacgcgcttacaggatcgaatttttc
gacgacgagatcgacgccattcgggtgtttgacccggaaacgcagcggtctgtcgaccaa
gtaacagcttgcgagatcggaccgaacaccgaggttctggccccgaaagagcgaattcaa
gcggtggcccgggtcgtgcgaagccagtgggagcggcagcgagaaaaattcgccgacgaa
ggccatcgggaacgagtggaccgatatatcggggaagacgtccggcgcatggagaccggc
tacccttttaccggactgctgcgttatatccaccttctgtatccgcgtcccggggggctt
ttaacctggatgcccgtggacgccatttgtgtatacgcggaacccatccgaattcgggac
agcctgaaacaacgggagcgggaggaacaggagtgggagttgcacggcctggaaaagggc
gagttgctctctggcctccaccgtcctactatggctggggatgccggtctctcgggacac
cggcagagggtgttgttctccttgctcgcccggcacacggccgccaaccggcgcgtgatt
tcggtgccggcccgttctatgcagcaattccatggccagatgaacgtcttgaaacaagaa
tgggaccggtggtgccgaacgggccagcgagtggtcctggtggcggcgaacggagaacgg
gccgagcggttgcgccgggtgctggaagactacggtatgtctgcagatctgacttctgaa
tggtccaaacaggccaatcgaccgcaaattgtcttgggaggaatctcgtccggcttcgag
atgccagatctcaagttggtcgtggtgaccgagcaggagatttttactgccaaacgccga
catcgccgagtgtccaccgtttcagatgcggaaaggatcaagaattaccaggacctgaaa
gttggcgactacgtggttcacgtaaaccacggtatcgggcaatacatgggaatccaaacc
ttggagatcgaagggattcacaaagattatctgtacattcgctatgctggaaatgacaaa
ttgtacgtacctatcgatcaaatcgatcaggtccaaaaatacatcggcggcgaagacaag
cagccaaaattgtatcatctcggcggaaccgagtgggccaaggtcaaaaaccgcgtccgc
tcctccatccgggatatcgcagaggaactggtcaaactctatgctcagcgaatggcctcg
cccggccatgcattctccccggataccccctggcagaaagagtttgaagcgatgttccca
taccgggagacgccggatcaattaaaggccatcgaagagattaagcgggatatggagcag
cctcgacccatggaccgactgctgtgcggggatgttggttacgggaaaacggaagtcgca
atgcgcgccgcgtttaaagccgtgatggacggtaagcaggtggccgtcctcgtacccacg
acggtgcttgcccagcaacattacgagacgtttcgggagcgtttccacggttttccgatc
tccattgatgtggtcagccggtttcgcacccgtggcgaaatgagtcaggtcttgaaacaa
ttacgagcaggcaccgtagacatcatcatcggtacccatcgactcctgcagaaggacgtg
aaattcaaggacttaggtctcctgattgtggatgaagaacaacgttttggcgttacacat
aaagaaaggctcaagcaactcaagaccaacgtggactgcctgaccctcaccgcgacaccg
attccccggactcttcacatgtccatgctgggagtgcgggatctgtcgattatcgagact
ccgccggaaaatcggttcccggtccagacctacgtgttggagtatgacgacttgctggct
aaagaggcgatcgaacgggaaattggccggggcggccaagtatattttttgtacaacaaa
gtacaggacattgaacaaatggcagatcacgtgagacgtctggtccccgatgccaaggtg
gcggtggcccacgggcagatgccggaagatcacctcgaactggtgatgctggagttcttg
cacggagaacacgatgtgctcgtgaccaccaccatcatcgagacgggtttggatattcca
aacgttaacacgctcattgtttacgatgcggatcatctcggactgtcgcagctttatcag
cttcggggccgagtcggacgatctaaccggattgcgtatgcgtatttcacctaccagccc
gaaaaggtgctgaccgaagtggcggaaaaaaggcttcaagcgatcaaggagtttacggaa
ctgggaagtgggtttaaaatcgccctcagggacctgtctatccgaggggccgggaaccta
ctggggccggaacagcacgggtttatcgcatcggtggggtttgacctgtacagcgacatg
ctcgctgatgcgattcgagagctcaagggtgaatccttacctcaagtggtcgaacctcaa
gtggaactggctgtggatgcttatttgcccgagcggtacattccggattccatgcagaag
atcgagatttacaagaaattcgtgtcgtgtcggcggttggaggatgtcgacgatctgcag
gaagagatcgaagaccgctttggggatattccccaagaggttctcaacctattggcggtg
acccgcatcaagatctgggcgatacggcatgatttcaagtcgatttcccagcagggtagt
gaggtcacgttaaaactgcatgagagacaaaacaagcacgtccagggcgaccgactgttt
gacctgaccaagcggttccgggagcggatcaagctcaccgcagggcagaacatcacaatg
acgctgcgcatgcgggggttgacggcggaacagtcgttgaaattgcttctggagttcatg
gaggcgtttcaagacgttgtcaaagggcaggaggaactgcaaaatgtcttatag
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