Lysobacter antibioticus 76: LA76x_0004
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Entry
LA76x_0004 CDS
T04154
Symbol
gyrB
Name
(GenBank) DNA gyrase, B subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
lab
Lysobacter antibioticus 76
Brite
KEGG Orthology (KO) [BR:
lab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lab03032
]
LA76x_0004 (gyrB)
03400 DNA repair and recombination proteins [BR:
lab03400
]
LA76x_0004 (gyrB)
Enzymes [BR:
lab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
LA76x_0004 (gyrB)
DNA replication proteins [BR:
lab03032
]
Prokaryotic type
DNA Topoisomerases
LA76x_0004 (gyrB)
DNA repair and recombination proteins [BR:
lab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LA76x_0004 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
ALN78166
UniProt:
A0A0S2DV37
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Position
4778..7246
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AA seq
822 aa
AA seq
DB search
MTNTEHDPSQDPSSGPTPQSQTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFE
VVDNAIDEALAGHADDVVVTLHEDGSVSCYDNGRGIPVDIHKEEGVSAAEVILTVLHAGG
KFDDNSYKVSGGLHGVGVSVVNALSEHLWLNIWRDGHQYQQEYALGEPIYPLKQLEASQK
RGTLLRFKPAVEIFTDVEFHYDILAKRLRELSFLNSGVKITLVDERGEGRRDLFQYEGGI
RSFVEHLAQLKTPLHPNVISVSGEQNGITVDVALQWTDSYQETMFCFTNNIPQKDGGTHL
IGFRAALTRTLTNYIEQSGLAKQAKIALSGDDMREGMIAVLSVKVPDPSFSSQTKEKLVS
SEVRPVVESTFGARLEEFLQEHPNEARAITGKIIDAARAREAARKARDLTRRKGALDIAG
LPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVERARFDRML
GSAEVGTLITALGTGIGKDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELI
ERGHIYIGLPPLYKIKQGKNEIYLKDDAALDQYLANNAVEGAALIPATGEPPIEGAALEK
LLLAYAGAKETIARNAHRYDPNVLQALIDFTPLDTEHLLKNVDERHELDALEKRLNQTGL
GKPRYSLALHPANETRQAALLVTRNHMGQQLIQVLPLSAFEGGELRSLREAASMLHGLVR
EGAQIVRGNRAQAVASFAQAQAWLLEEAKKGRAIQRFKGLGEMNPEQLWDTTVNPETRRL
LQVRIEDAVAADQIFSTLMGDVVEPRREFIEDNALKVANLDV
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacaccgagcacgacccctcgcaagacccgagctccggcccgaccccgcaatcg
cagacctacgactccagcaagatcaccgtcttgcgcggtctcgaggccgtgcgcaagcgc
ccgggcatgtacatcggcgatgtccatgacggcaccggcctgcaccacatggtcttcgag
gtcgtcgacaacgcgatcgacgaggcgctggcgggtcatgccgacgatgtcgtcgtcacc
ttgcacgaagacggttcggtctcctgctacgacaacggtcgcggcattccagtcgacatc
cacaaggaagaaggcgtgtccgcggccgaggtgatcctcaccgtgctgcatgccggcggc
aagttcgacgacaacagctacaaggtctccggcggtctgcacggcgtcggcgtgtcggtg
gtcaatgcgctgtccgagcacctgtggctgaacatctggcgcgacggtcaccagtaccag
caggaatatgcgctcggcgaaccgatctacccgttgaagcaactggaagcttcgcaaaag
cgcggcaccctgctgcgcttcaagccggccgtggagatcttcaccgacgtcgaattccac
tacgacatcctggccaagcgcctgcgcgagctgtcgttcctgaattccggggtcaagatc
accctggtcgacgagcgcggcgaaggccgccgcgacctgttccagtacgagggcggcatc
cgctccttcgtcgagcatctggcccagctcaagacgccgctgcacccgaacgtgatctcg
gtgtcgggcgagcagaacggcatcaccgtcgacgtggcgctgcagtggaccgactcctac
caggagacgatgttctgcttcaccaacaatattccgcagaaggacggcggcacccacctg
atcgggttccgcgccgccctcacccgcaccctgaccaactacatcgaacagagcggcctg
gccaagcaggccaagatcgccctgtcgggcgacgacatgcgcgaaggcatgatcgcggtg
ctgtcggtgaaggtgccggatccgagcttttcctcgcagaccaaggaaaaactggtcagt
tccgaggtccgcccggtcgttgagagcacgttcggtgcacgtttggaggagttcctgcag
gaacaccccaacgaggcccgagccatcaccggcaagatcatcgacgccgcccgcgcccgc
gaagccgcgcgcaaggcgcgcgacctgacccgccgcaagggcgcgctcgacatcgccggc
ctgcccggcaagctcgccgactgccaggaaaaagatcccgcgctcagcgaactgttcatt
gtcgagggcgactccgcaggcggctcggccaagcagggccgcaaccgcaagacccaggcg
atcctcccgctcaagggcaagatcctcaacgtcgagcgcgcgcgtttcgatcgcatgctc
ggcagcgccgaagtcggcaccctgatcaccgcgctcggcaccggcatcggcaaggacgag
tacaacccggacaagctgcgctatcaccgcatcatcctgatgaccgacgccgacgtcgac
ggctcgcacatccgcaccttgctgctgacgttcttctaccggcaaatgccggagctgatc
gagcgcggccacatctacatcggcctgccgccgctgtacaagatcaagcagggcaagaac
gagatctacctcaaggacgatgccgcgctcgatcagtacctggccaacaatgcggtggaa
ggcgcggcgctgattccggcgacgggcgaaccgccgatcgaaggcgcggcattggagaag
ctgctgctcgcctacgccggcgccaaggaaaccatcgcccgcaacgcgcatcgctacgat
ccgaacgtgctgcaggcgctgatcgatttcaccccgctcgacaccgaacacctgctcaag
aacgtcgacgagcgccacgaactcgacgcgctggaaaagcgtctcaaccagaccggtctg
ggcaagccgcgttattcgctggcgctgcatccggccaacgaaacccgccaggccgcgttg
ttggtcacgcgcaaccacatgggccagcaactgatccaggtgttgccgctgtcggcattc
gaaggcggcgagctgcgttcgctgcgcgaagcggcctcgatgctgcacggcctggtgcgc
gaaggcgcgcagatcgtgcgcggcaaccgcgcgcaagccgtcgccagcttcgcccaggcc
caggcctggttgctcgaagaagccaaaaaaggccgcgctatccagcgattcaagggtctg
ggcgaaatgaaccccgagcagctgtgggacaccacggtcaatccggaaacgcgtcgcctg
ctgcaggtgcgcatcgaagatgccgtcgccgccgatcagatcttcagcactctgatgggc
gacgtggtcgaaccgcgtcgcgagttcatcgaagacaatgcgctgaaggtggccaatctc
gacgtctga
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