Lysobacter antibioticus 76: LA76x_2742
Help
Entry
LA76x_2742 CDS
T04154
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lab
Lysobacter antibioticus 76
Pathway
lab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LA76x_2742 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lab03400
]
LA76x_2742 (ligD)
Enzymes [BR:
lab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LA76x_2742 (ligD)
DNA repair and recombination proteins [BR:
lab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LA76x_2742 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ALN80872
UniProt:
A0A0S2FBC9
LinkDB
All DBs
Position
complement(3173957..3176509)
Genome browser
AA seq
850 aa
AA seq
DB search
MTLRDYVRKRRFDATPEPDADRGRAGRGRRKAPIFVVQLHHARARHYDFRLEADGVLKSW
AVPKGPSLRAGERRLAVEVEDHPLSYADFEGDIPEGQYGAGHVDIFDHGTWRTDDDALDQ
IAAGKLDFELDGERLHGRFTLVRTRPVGKQQQWLLIKRSDEHARDSDADRMLDEPAAIAQ
PAAPLPKQVAGKSRAASAKARGAGSRGSGVRSSGVWRNVAAKIAGAVAAPMPKDVELQLA
TLRERPPSGSEWQFEVKWDGYRMLAYVQRGVRLQSRNKVDWSERFAHLAEAIAGLSVRSA
ILDGELIASDRSGRSDFGELQRLLESGQLDSLHYVIFDLLYLDGIDLRGAAQAQRRGLLR
EVLAASTSDALAFSEHVEGDAGQVLAASVKAGLEGIICKRADAPYHGGRSQAWIKLKHVA
DEEFIVVGHTPPKHGRQGFGSLLLARPGADGLAYVGRVGSGFSDAALRSLSKRLQALHSE
QAAVELPGHVPFPRRSVRWVAPELVVDVHSRGRGKEGLIRQASFVRLREDKRAADLSAAV
AAAQAEPAPRRARAGRARPLQETAMSDTRLSHPERIVYPVAKISKGEVADYYRAVEAWLL
PELVERPLSLLRCPDGIASACFFQKHHADSLGEGVHPVRLRESAGQADYVYVRDIEGVSA
LVQMNTLEFHPWGAKRQAPDRPDRLVFDLDPAEDIAWSELKRAGREVRDRLAEIGLDSWP
RLSGGKGMHVVVPIRPGPRWAEAKAFSEAFADAMVAQSPLRYVATASKVARKGRIFIDWL
RNARGATSVASWSLRAREGAPVAMPLRWDEFSRARSSTDFDLAKALRRAARLRSDPWEGF
AESRQRLPTI
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
gtgactctgcgcgattacgtgcgcaaacgccgcttcgacgccacgccggagccggatgcc
gaccgcggccgcgcaggtcgagggcggcgcaaggcgccgatcttcgtcgtccagttgcac
catgcgcgggcccgccactacgacttccgcctggaagccgatggcgtgctgaagagctgg
gcggtgccgaaggggccgtcgttgcgtgccggcgagcgccgtctcgcggtcgaggtcgaa
gaccacccgctgtcctatgcggatttcgagggagacattcccgaaggccagtacggtgcc
ggccatgtcgacatcttcgatcatggcacctggcgcaccgacgacgacgcactcgaccag
atcgccgccggcaagctcgatttcgaactcgacggcgagcgcctgcacggccgtttcacc
ctggtgcggacccggcccgtcggcaaacagcagcagtggctgctgatcaagcgcagcgac
gagcatgcgcgcgacagcgacgccgaccgcatgctcgacgagcccgccgcgatcgcccaa
cccgcggcgccgctgccgaaacaggtcgccggaaagtcgcgagcggcgagcgccaaggca
cgcggggctgggtcacgcgggtccggggtgcgtagttccggagtctggcgcaacgtcgcg
gcgaagatcgccggtgccgtcgcggcgccgatgccgaaagacgtcgaattgcagctggct
accttgcgcgagcgcccgccgagcggcagcgagtggcagttcgaagtcaagtgggacggc
tatcgcatgctcgcctacgtccagcgtggcgtacgcctgcaatcgcgcaacaaggtcgat
tggagcgagcgcttcgcgcacctggccgaggccatcgctggcctgtcggtgcgcagcgcg
atcctcgacggcgagttgatcgcctccgaccgcagcggccgcagcgatttcggcgagttg
cagcgcttgctcgaatccgggcagttggattcgctgcactatgtgatcttcgacctgctg
tatctggacggcatcgacctgcgcggcgcggcgcaggcgcagcgccgaggcttgctgcgc
gaggtgttggcggcctcgacctcggacgcgctggccttcagcgaacatgtcgaaggcgat
gccgggcaggtgctggcggcgagcgttaaggccggcctggaaggcatcatctgcaagcgc
gccgatgcgccttaccacggtggccgcagccaggcctggatcaagctcaagcacgtcgcc
gacgaggaattcatcgtcgtcgggcatacgccgccgaagcacggccgccaggggttcggc
tccctgctgttggcccggcccggcgccgacggtctggcgtatgtcggccgtgtcggcagc
ggtttcagcgatgcggcgctgcgcagcctgagcaagcgcctgcaggcgctgcacagcgaa
caggcagcagtggaactgcccgggcacgtgccgtttccgcgacgttcggtgcgctgggtc
gcgccggaactggtcgtcgacgtgcattcgcgtggacgcggcaaggaaggcctgatccgc
caggccagcttcgtgcggctgcgcgaggacaaacgggccgccgacctgagcgccgccgtc
gcggccgcgcaggccgagcctgcgccgcgccgcgcccgggcagggcgcgcccgccccctc
caggagaccgcgatgagcgatacccggctcagccatcccgaacgcatcgtctatcccgtc
gcgaagatcagcaaaggcgaggtcgccgattattaccgcgcggtcgaggcctggctgctg
ccggaactggtcgaacgtccgctgtccttgctgcgctgcccggacggcatcgcatcggcg
tgtttcttccagaaacaccatgccgacagcctgggcgagggcgtgcacccggtccgcctg
cgcgagtccgccggccaggccgactacgtctacgtgcgcgacatcgaaggcgtgtcggcg
ctggtgcagatgaacaccctggagttccatccctggggcgcgaaacggcaggcgccggac
cggccggatcggttggtgttcgacctggacccggccgaggacatcgcctggagcgaactc
aagcgggccgggcgcgaagtgcgcgaccggctcgccgaaatcgggctcgacagctggccg
cgcctgtccggcggcaagggcatgcacgtggtggtgccgatccggccaggcccgagatgg
gccgaggccaaggccttcagcgaggccttcgccgacgccatggtcgcgcagtcgccgcta
cgctacgtcgcgacggcatccaaggtcgcccgcaaggggcgcatcttcatcgactggctg
cgcaatgcgcgcggcgccaccagcgtggcgagttggtcgctgcgcgcgcgcgaaggcgcg
ccggtggcgatgccgttgcgctgggacgagttctcgcgtgcgcgttcttcgaccgacttc
gatctggccaaggcattacgtcgcgccgcgcgcctgcgcagcgatccctgggaaggtttc
gccgagagccgacaacgcttgccgacgatatga
DBGET
integrated database retrieval system