Labrenzia sp. VG12: CHH27_06345
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Entry
CHH27_06345 CDS
T04984
Name
(GenBank) hydrophobe/amphiphile efflux-1 family RND transporter
KO
K18138
multidrug efflux pump
Organism
labr
Labrenzia sp. VG12
Pathway
labr01501
beta-Lactam resistance
labr01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
labr00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
CHH27_06345
01503 Cationic antimicrobial peptide (CAMP) resistance
CHH27_06345
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
labr02000
]
CHH27_06345
01504 Antimicrobial resistance genes [BR:
labr01504
]
CHH27_06345
Transporters [BR:
labr02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
CHH27_06345
Antimicrobial resistance genes [BR:
labr01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
CHH27_06345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF
Motif
Other DBs
NCBI-ProteinID:
ASP32915
UniProt:
A0A222F0W1
LinkDB
All DBs
Position
complement(1387398..1390568)
Genome browser
AA seq
1056 aa
AA seq
DB search
MFSRFFIYRPKFALVISIVITIAGLLGYVSLPVEQFPNITPPVVNVSATYTGANAEVLEE
TVAAPIEGQVNGVDDMLYMQSTSNDSGNYSLNVTFAVGTDPDIATVNTQNRVSQATSQLP
SEVTANGVTVQKASTNMLLVITLYSPNGTYDPVFLSNYASINLKDALARVQGVGRADVMT
DFAYGMRIWLDPDRLTSLGMTPSDFISAVQDQNIQVAAGQIGAPPVPEGQQFQYTIKAKG
RLSTKEEFEQIVLRTGEDGAVVKIGDVARVELGAQFYNASGEFNGKPSTVLAIYQAPGAN
ALQVSENVLARLESLSKNFPEDMSYGVPFNTTDFVQASLDDVIATLFLTFLLVVSVVFIF
LGNWRATIIPTVAIPVSLIGTFAVLLALGMSLNTISLFALVLAIGIVVDDAIVVVENVER
IIADEGLPPKEATAKAMEQITSPVIATTLVLLAVFVPTIFMPGITGRLYSQFAVTISVSV
VISSINALTLSPALCGLILKARSGPPKGIMGLFDRGITGVRNGYTAIVRRLVRVAIVGIV
VVGGAVAIIVTLGGTLPQGFLPSEDQGYLMVDVQLPDGASLQRTESVTKQVVELTSKTAG
VENVVIVNGYSILNGATSSNAALVIATMSNWSERQAPDLRINAILAKFWAEFSTIPGANI
IAFNPPPIPGLGTTGGVQMMVQQSDGTPQDLASAVGSMVYSANQSADIGRAYSTFRANVP
QVFVDLDREKAKTLGINVADVFTTLQAYLGSYYINDFNIFGRVYKVMIQAEGKYRDRVDD
IGSLYVRSTDGTMVPLRSILTTENVLGPQILTRYNMFRAAAVMGDPAPGASTGVVINEME
GAARQALPPGYSFEWTGTAQQQLDSGNIVMFILLLSILFTYLFLVAQYESWTMPVAILMS
VSFAIMGALVAVFVTGGDVNLYTQIGMIMLVGMGAKNAILIVEFAMEQRDSGKSIRDAAV
EAAHLRFRAVMMTALSFLLGVVPLMTASSAGAASQKAIGFAVFGGMLFATVVGVMMIPIL
YVCLQATRETVKGWFGGGKDDQGPEGPTEPAAAVQG
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgttttcacgcttttttatctaccggccgaaattcgcgctggtcatttcgattgtgatc
acgattgccggcttgctcggttacgtgtcactgccggttgaacagtttccgaacatcacg
ccgccggtggtcaacgtgtcggcgacctatacgggcgcaaacgcggaagttctagaagaa
acggtcgcggccccgatcgaggggcaggtcaacggcgtcgacgacatgctttacatgcag
tcgaccagtaacgacagcggcaactattcgctgaatgtgacttttgcggtcggtaccgac
ccggatattgccaccgtcaacacccagaaccgggtcagccaggcaacgagccagctgccg
agcgaggtgacggcaaacggcgtgaccgtgcaaaaggccagcaccaacatgctgctggtg
atcacgctctattcgccgaacggcacgtatgatcccgtcttcctgtccaactatgcctcg
atcaacctgaaggacgcgcttgcgcgtgtgcagggcgtcggccgggcagatgtgatgacc
gactttgcctatggcatgcgcatctggcttgatccggaccgcctgaccagcctaggcatg
acaccctcggatttcatcagcgcagttcaggaccagaacatccaggtggcagccggccag
atcggtgcgccgccggtgccggaaggccagcagttccagtacacgatcaaggccaagggg
cgcctgtcgaccaaggaagagttcgagcagatcgtcctgagaacgggcgaagacggtgcc
gtcgtcaagatcggcgatgtcgcccgcgtcgaactcggggctcagttctacaacgcctcg
ggtgaattcaacggcaaaccatcgacggttctcgcgatctatcaggcgcccggcgccaac
gcgcttcaggtctccgagaacgtcctggcacgattggaaagcctgtcgaaaaacttcccg
gaagacatgtcctatggcgtgccgttcaacaccacggacttcgtgcaggcctcgctggac
gatgtgatcgccacgctgtttctgaccttcctgctggtggtctcggtggtgttcatcttc
cttggcaactggcgcgccaccatcattccgacggtggccatccccgtgtcgctgatcggc
acgtttgcggtgctgctggcactgggcatgtcgttgaacacgatttcgctgttcgcgctt
gtcctcgccatcggcatcgtggtggatgacgcgattgttgttgttgaaaacgtcgagcgc
atcattgccgatgagggcctgccgcccaaggaagcgaccgccaaggcaatggagcagatc
accagtccggtgattgccaccacgctggtgctgcttgcggtgttcgtgccgaccatcttc
atgccgggtattacaggccggctctattcccagttcgcggtcaccatctcggtctccgtc
gtgatttcctccatcaacgccctgaccctgtcaccggcgctctgtggactgatcctcaag
gcccgttccggccctcccaagggcatcatgggactgttcgaccggggcatcacgggcgtt
cgaaatggctacactgcgattgtgcggcggctggtccgtgttgcgatcgtcggcattgtc
gttgttggcggtgccgttgccatcatcgtgacgcttggaggaacgttgcctcagggcttc
ctgccatcggaagaccagggttatctgatggttgatgtgcagctaccggacggtgcctcg
ctgcaacggaccgaaagtgtgacaaagcaggtcgtggagcttacctccaagacagcgggt
gtggaaaacgtcgtcatcgtcaacggctattccatcctgaacggggcaacttcgtccaac
gctgcgctggtgatcgccacaatgtcgaactggtcggagcgacaggcacccgaccttcgg
atcaatgcgatcctggccaagttctgggccgaattctccaccatcccgggggcgaatata
attgccttcaacccgccgccaatcccgggcctcggaacgaccggcggtgttcagatgatg
gttcagcaaagtgacggcacgcctcaggacctggcgtccgcggtcggctcgatggtctat
tcggccaaccagagcgcggatatcgggcgtgcctattcgaccttccgggcgaatgtgcct
caggtcttcgtggatctggatcgcgagaaggccaagacgcttggcatcaacgtcgccgat
gtcttcacgacgctgcaggcctatctggggtcttactacatcaatgacttcaacattttc
ggccgcgtctacaaggtgatgatccaggctgagggcaaatatcgcgaccgggttgacgat
atcggcagtctctatgtccgttccacggatggcacgatggtgccgctcaggagtatcctg
acgactgagaacgttctcgggccgcagatcctgacccgctacaacatgttccgggccgct
gccgtcatgggggatcccgcgccgggcgcttccacgggcgtggtgatcaacgagatggaa
ggtgccgcaaggcaggcactgccgccgggctattcctttgagtggacgggaacagctcag
cagcagctcgattccggcaacatcgtcatgttcatcctgttgctgtcgatcctgttcacc
tacctgttcctggtcgcccagtatgaaagctggaccatgcccgtggcgatcctgatgtca
gtctcgttcgccatcatgggggcactcgtggcggtgttcgtgacaggcggcgatgtcaat
ctctacacccagatcggcatgatcatgctggtggggatgggggcgaaaaacgccatcctg
attgtggaatttgccatggagcagcgcgacagcggcaaatcgatccgcgatgcagccgtg
gaggccgcccatctgcgtttccgcgcggtgatgatgactgcgctgtcgttcctgctgggc
gtggtgccgctgatgaccgcctccagtgccggcgcggccagccagaaggccatcggcttc
gctgtttttggtggcatgctgtttgcgacagttgtcggcgtgatgatgatcccgatcctc
tatgtctgcctgcaggcgacgcgggagacggtgaaaggctggttcggcggcggcaaggac
gatcaggggcccgaggggccgacagagccagctgcggccgtccagggctag
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