Lacibacter sediminis: H4075_13000
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Entry
H4075_13000 CDS
T06746
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lacs
Lacibacter sediminis
Pathway
lacs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lacs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4075_13000 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lacs03019
]
H4075_13000 (rnr)
03016 Transfer RNA biogenesis [BR:
lacs03016
]
H4075_13000 (rnr)
Enzymes [BR:
lacs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H4075_13000 (rnr)
Messenger RNA biogenesis [BR:
lacs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H4075_13000 (rnr)
Transfer RNA biogenesis [BR:
lacs03016
]
Prokaryotic type
tRNA degradation factors
H4075_13000 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Hyphal_reg_CWP
Motif
Other DBs
NCBI-ProteinID:
QNA43006
UniProt:
A0A7G5XC03
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All DBs
Position
complement(3067286..3069376)
Genome browser
AA seq
696 aa
AA seq
DB search
MKKKKINKESKQKESKDSSAKHKSSKVSGGKHKHPGASHRGVIDITRSGMGYVTVVDMER
DVIVRPQHFNTALHGDTVEVQITKSGGGGGRVEGEIVRIIERKQTQFIGRISIQKNYSFF
IPETDRPMPDLFIPTDKLNGAVNNDKVVVKLTSWDKAKRVPEGEVLELVKQEAENDIAMK
QILLGAGFNLSFDDEVMEQAERFPDGVSDAEAKKRRDFRDVLTFTIDPVDAKDFDDALSI
KKNANGLYEIGVHIADVSYYVEPGTKLDDEAYARATSVYLPDRVLPMLPERISNELCSLR
PKEDKYTFSAVFQMTDKGEIKDVWLGRTVIHSNHRFSYEQVQEIIEAGGEGLYGDEIMLL
NTLAQKMRKERFKKGAINFSSQEVRFVLDENRKPIGITIKESKEAHQLIEEFMLLANKHV
AEFIGKITVKEKPVPFPYRVHDTPDEAKLGPFMVFAKKYGHTFDVSSPQRIAESFNQMLK
DAHGKPEQHVLEALGIRTMAKAVYTAENIGHYGLGFEHYCHFTSPIRRYPDVLVHRVLQQ
CLDKQPQIDKKMEAKCKHCSERERSAMESERAANKYKQVEYMSQFLGEEFEGVVSGVASF
GFWVETVAHKCEGLVSLFSLSDFDDFRHMEEDYCLVGKRSGRSFRMGDKVTIKVVAANLE
KRQLDYELVLGHIDSTEKKVLQPTKFQHPKKKRGKK
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaagaaaatcaacaaagaatcgaagcagaaagaatccaaagattcatctgca
aaacataaatcatccaaggtttcgggtggcaaacataaacatccgggtgcaagtcatcgt
ggtgttattgatattacaagaagcggtatgggttatgttactgtggtggacatggaacgt
gatgtcattgttcgtccgcaacattttaatactgcactgcatggcgatacagttgaagtg
cagatcaccaaaagtggtggcggcggcggaagagtggaaggagagatcgtccgtatcatc
gaacggaaacaaacgcaattcattggccgcatcagtatccaaaagaattacagctttttt
attccggagacagacaggccaatgcccgatctgtttatcccaacagataagttgaatggc
gcagtgaataatgataaagtagtggtgaaactaacgtcatgggataaggccaaacgtgta
cctgaaggtgaagtgcttgaactggtgaaacaggaagctgagaacgatattgccatgaag
caaatcttgctgggtgcaggtttcaatttaagttttgatgatgaagtgatggagcaggcc
gaacgttttcctgatggtgtgagtgacgccgaagcaaagaagcgccgggattttcgtgat
gtattaacgtttacgattgatcctgttgatgcaaaagattttgatgatgcgctctccatt
aagaaaaatgcaaatggtttatatgagattggtgtacacattgctgacgtaagttattat
gttgagccgggaacaaaactcgatgatgaagcgtatgcgagagctacatctgtgtactta
cctgatcgtgtattgcccatgttgcccgagcgtatttcgaatgaattgtgttcgcttcgt
ccgaaagaagataagtatacgttctctgccgtttttcaaatgactgataaaggcgagatc
aaagatgtgtggctgggaagaacagtcattcattccaatcatcgcttcagctatgagcaa
gtgcaggaaattattgaagcaggtggtgagggtttgtatggcgatgaaattatgttgctc
aacacccttgcacaaaagatgcggaaagagcgtttcaaaaaaggagcgattaatttctcc
tcgcaggaagtgcgttttgtgttagatgaaaaccgtaaaccgatcggtattaccattaaa
gaaagtaaagaagcgcatcagctgattgaagagtttatgttgctggcaaataaacatgtg
gcagagtttattggtaagatcacggtaaaagagaaacctgttccgtttccttaccgtgta
cacgatacacccgatgaagcaaaacttggtccgtttatggtattcgctaaaaaatacggg
cacacgtttgatgtatcatcgccgcaacgtattgccgaatcgtttaaccagatgctgaaa
gatgcacatggtaaacctgagcagcatgtattggaagcgttgggcatccgcaccatggcc
aaggccgtttatactgctgagaatatcggtcactatggtctgggttttgaacattactgt
catttcacttcacccatccgtcgttatcctgatgtattggtgcatcgtgtgttgcagcaa
tgtctggataaacaaccacagatcgataagaagatggaagcgaaatgcaaacattgcagt
gagcgtgaacgttcggctatggaaagcgaacgtgctgccaacaaatacaaacaagtggaa
tacatgagccagttccttggtgaagagttcgaaggggtggtgagtggtgtcgcatcgttt
ggcttctgggttgaaactgttgcacataaatgcgaaggcttggtgagtttattttcgctg
agtgattttgatgatttcagacatatggaagaagattattgcctggtgggtaaacgcagc
ggtcgcagtttcagaatgggtgataaagtaacgatcaaagtagtggcagcgaacctggaa
aagcgtcaacttgattatgaattggtattggggcatattgattctactgagaaaaaagta
ttgcagccaacgaagtttcagcatccgaagaagaagagagggaagaagtag
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