KEGG   Luteibacter aegosomatis: L2Y94_20495
Entry
L2Y94_20495       CDS       T09054                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
laeg  Luteibacter aegosomatis
Pathway
laeg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:laeg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    L2Y94_20495 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:laeg03400]
    L2Y94_20495 (ligD)
Enzymes [BR:laeg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     L2Y94_20495 (ligD)
DNA repair and recombination proteins [BR:laeg03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     L2Y94_20495 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: UPG85642
LinkDB
Position
4581090..4583648
AA seq 852 aa
MSLDRYRRKRDFTRTREPAADAAVPKGARAIFVVQLHHASRRHFDFRLQVGDALRSWAVP
KGPSYDPKVKRLAVEVEDHPVSYADFEGDIEEGYGKGHVDTFDHGIWATAGDAETQLRRG
HLTFDLYGERLKGRWHLVRSGRKERQPAWFLIKAEDRYAGDVEADDLLDAKMRESTRRAA
KTPATKAAAKRSTARKKAPPKTRKVSIASLRKAVAATKGAKRAAVPHDFFAPQLARLHDA
PPKGDEWLHEVKWDGYRILAGVANGDVTLWSRNALVWNERVPDIVQAVEELGLDSARLDG
ELIALDAQGRSDFNALQKTLSGEAQAPLVYMLFDLPYLEGHDLSRAALVDRKALLERLLA
HAPERLGYSSHNLGDGDQVFAMAMEQKLEGIISKRAQGAYHSGRNDDWWKIKRLESDEFA
VVGYTPAKGSRVSFGSLLLARPAEGGGWTYMGRVGTGFTDQMLRDLGKSLAKGGAKKPVV
RIDDIDPMLRGALWVAPTVVAEVYYRGIGNKHLLRQPSLKALRVDKSPDDLRDSDRSPRG
KTTRQATGELAITHPDRLVYPDDGITKQDVVDYYRAVMPWLLPPIADRPTSIIRFPDGIA
KHGFFQKHVMPGLKRVGTAKLKEDSGAQAVYLYPKDADGLIELVQFGAVEFHPWGSHVDT
PDLADRVVFDLDPGDGVEWRRVIAAARLMRDVLGQLGLQSFVRTTGGKGLHVVVPLNPGA
DWATVKRFARGVAETLAAMHPLEFVASATKRIRNGRIYIDYLRNGRGATAVASYSLRGRP
GAPVAVPLRWEELGRLASAAAFDLHSVPKRLSRQKRDPWEGIDAVRQDLAAVEARLGGLS
EAPVPRKRLRTK
NT seq 2559 nt   +upstreamnt  +downstreamnt
atgagcctcgaccggtaccgtcgcaagcgtgatttcaccaggacgcgcgaaccggcggcc
gacgcggccgtgccgaagggcgcccgtgccatcttcgtggtgcagttgcatcatgcctcg
cgccggcacttcgattttcgcctgcaggtgggcgacgccctgcgcagttgggcggtaccc
aagggccccagttacgaccccaaggtgaagcgcctcgccgtggaggtcgaagatcacccg
gtgtcgtacgccgatttcgaaggcgacatcgaggaaggctacggcaagggtcacgtggac
accttcgaccacggcatctgggcgacggccggcgatgcggaaacgcagttgcgcaggggc
catctcaccttcgacctgtacggcgaacggctcaagggccgctggcacctggtgcgcagc
ggccgcaaggagcgccagcccgcgtggttcctgatcaaggccgaggaccgctacgccggc
gacgtcgaagcggacgacctgctcgacgcgaagatgcgcgaaagcacgcgccgcgcggcg
aagacgcccgccacgaaggcggccgcgaagcgttccaccgcacgcaagaaggcgccaccg
aaaacgcgcaaggtctcgatcgccagcctgcgcaaggccgtggccgccacgaagggcgcg
aagcgagccgccgtgccgcacgatttcttcgcgccccagttggcacggctgcacgacgca
ccgcccaagggcgacgaatggctgcacgaggtgaagtgggatggctaccgcatcctcgcc
ggcgtcgcgaacggcgacgtcacgctgtggtcgcgcaacgcgctggtctggaacgaacgc
gtgcccgacatcgtgcaggccgtggaggaactgggcttggacagcgcgcgcctcgacggc
gagctgatcgccctggacgcgcagggccgcagcgacttcaacgccttgcagaagacgctg
tccggcgaggcgcaggcgccgctggtctacatgctgttcgacctgccctacctcgaaggc
cacgacctgagccgcgcggcgctcgtcgatcgcaaggccctgctcgagcgcctgctcgcc
cacgcacccgagcgactcggttacagctcgcacaacctcggcgacggcgaccaggtgttc
gccatggccatggaacagaagctcgaaggcatcatctccaagcgggcccagggggcgtac
cacagcggacgcaacgacgactggtggaagatcaagcggctggagagcgacgagttcgcg
gtggtcggctacacgccggccaagggttcgcgcgtgtcgttcggttcgctgttgctcgcg
cgccccgccgagggcggcggctggacctacatgggccgcgtgggcacgggctttaccgac
cagatgcttcgcgacctgggcaagtcgctcgccaagggtggcgcgaaaaagcccgtcgtg
cgcatcgacgacatcgatccgatgctgcgcggcgcgctgtgggtcgcgcccaccgtggtc
gccgaggtctattaccggggcatcggcaacaagcacctgctgcgccagccgagcctgaag
gcgttgcgcgtggacaagtcgccggatgacctgcgcgattcggaccgctcgccacgcggg
aaaacgactcggcaggctaccggcgagctggcgatcacccaccccgaccgcctcgtctat
cccgacgacggcatcaccaagcaggacgtggtcgactactaccgcgccgtgatgccctgg
ctgctgccgcccatcgccgaccggccgacgtcgatcatccgtttccccgacggcatcgcc
aagcacggttttttccagaagcacgtgatgccagggctgaaacgcgtcggcaccgcgaag
ctcaaggaagactccggcgcccaggcggtctacctgtatccgaaggacgcggacggcctc
atcgaactggtgcagttcggcgccgtggaattccatccctggggttcgcacgtcgatacg
cccgacctcgccgaccgcgtggtcttcgacctggatccgggcgacggcgtcgaatggcgg
cgagtgatcgccgccgcgcggctgatgcgcgacgtgctgggccagctcggcctgcaatcg
ttcgtacgcaccaccggcggcaagggcctgcacgtggtggtgccgctcaaccccggcgcg
gactgggccacggtgaaacgcttcgcgcgcggggtggccgaaaccctcgccgccatgcac
ccgctggaattcgtcgccagcgccaccaagcgcatccgcaacggtcgcatctacatcgat
tacctgcgcaacgggcgcggcgccacggcggtggcctcgtactcgctgcgcggacgaccg
ggcgcgcccgtggccgtgcccttgcgctgggaggaactgggccgcctcgcgtcggcggcg
gcattcgacctgcattcggtgccgaaacggctttcccggcagaagcgcgatccgtgggaa
ggcatcgacgccgtacgccaggacctggccgccgtggaagcccggctcggcggcctttcg
gaggcacccgtcccccgtaagcgtttgcggaccaagtag

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