Luteibacter aegosomatis: L2Y94_20495
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Entry
L2Y94_20495 CDS
T09054
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
laeg
Luteibacter aegosomatis
Pathway
laeg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
laeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L2Y94_20495 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laeg03400
]
L2Y94_20495 (ligD)
Enzymes [BR:
laeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L2Y94_20495 (ligD)
DNA repair and recombination proteins [BR:
laeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L2Y94_20495 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UPG85642
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Position
4581090..4583648
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AA seq
852 aa
AA seq
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MSLDRYRRKRDFTRTREPAADAAVPKGARAIFVVQLHHASRRHFDFRLQVGDALRSWAVP
KGPSYDPKVKRLAVEVEDHPVSYADFEGDIEEGYGKGHVDTFDHGIWATAGDAETQLRRG
HLTFDLYGERLKGRWHLVRSGRKERQPAWFLIKAEDRYAGDVEADDLLDAKMRESTRRAA
KTPATKAAAKRSTARKKAPPKTRKVSIASLRKAVAATKGAKRAAVPHDFFAPQLARLHDA
PPKGDEWLHEVKWDGYRILAGVANGDVTLWSRNALVWNERVPDIVQAVEELGLDSARLDG
ELIALDAQGRSDFNALQKTLSGEAQAPLVYMLFDLPYLEGHDLSRAALVDRKALLERLLA
HAPERLGYSSHNLGDGDQVFAMAMEQKLEGIISKRAQGAYHSGRNDDWWKIKRLESDEFA
VVGYTPAKGSRVSFGSLLLARPAEGGGWTYMGRVGTGFTDQMLRDLGKSLAKGGAKKPVV
RIDDIDPMLRGALWVAPTVVAEVYYRGIGNKHLLRQPSLKALRVDKSPDDLRDSDRSPRG
KTTRQATGELAITHPDRLVYPDDGITKQDVVDYYRAVMPWLLPPIADRPTSIIRFPDGIA
KHGFFQKHVMPGLKRVGTAKLKEDSGAQAVYLYPKDADGLIELVQFGAVEFHPWGSHVDT
PDLADRVVFDLDPGDGVEWRRVIAAARLMRDVLGQLGLQSFVRTTGGKGLHVVVPLNPGA
DWATVKRFARGVAETLAAMHPLEFVASATKRIRNGRIYIDYLRNGRGATAVASYSLRGRP
GAPVAVPLRWEELGRLASAAAFDLHSVPKRLSRQKRDPWEGIDAVRQDLAAVEARLGGLS
EAPVPRKRLRTK
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcgaccggtaccgtcgcaagcgtgatttcaccaggacgcgcgaaccggcggcc
gacgcggccgtgccgaagggcgcccgtgccatcttcgtggtgcagttgcatcatgcctcg
cgccggcacttcgattttcgcctgcaggtgggcgacgccctgcgcagttgggcggtaccc
aagggccccagttacgaccccaaggtgaagcgcctcgccgtggaggtcgaagatcacccg
gtgtcgtacgccgatttcgaaggcgacatcgaggaaggctacggcaagggtcacgtggac
accttcgaccacggcatctgggcgacggccggcgatgcggaaacgcagttgcgcaggggc
catctcaccttcgacctgtacggcgaacggctcaagggccgctggcacctggtgcgcagc
ggccgcaaggagcgccagcccgcgtggttcctgatcaaggccgaggaccgctacgccggc
gacgtcgaagcggacgacctgctcgacgcgaagatgcgcgaaagcacgcgccgcgcggcg
aagacgcccgccacgaaggcggccgcgaagcgttccaccgcacgcaagaaggcgccaccg
aaaacgcgcaaggtctcgatcgccagcctgcgcaaggccgtggccgccacgaagggcgcg
aagcgagccgccgtgccgcacgatttcttcgcgccccagttggcacggctgcacgacgca
ccgcccaagggcgacgaatggctgcacgaggtgaagtgggatggctaccgcatcctcgcc
ggcgtcgcgaacggcgacgtcacgctgtggtcgcgcaacgcgctggtctggaacgaacgc
gtgcccgacatcgtgcaggccgtggaggaactgggcttggacagcgcgcgcctcgacggc
gagctgatcgccctggacgcgcagggccgcagcgacttcaacgccttgcagaagacgctg
tccggcgaggcgcaggcgccgctggtctacatgctgttcgacctgccctacctcgaaggc
cacgacctgagccgcgcggcgctcgtcgatcgcaaggccctgctcgagcgcctgctcgcc
cacgcacccgagcgactcggttacagctcgcacaacctcggcgacggcgaccaggtgttc
gccatggccatggaacagaagctcgaaggcatcatctccaagcgggcccagggggcgtac
cacagcggacgcaacgacgactggtggaagatcaagcggctggagagcgacgagttcgcg
gtggtcggctacacgccggccaagggttcgcgcgtgtcgttcggttcgctgttgctcgcg
cgccccgccgagggcggcggctggacctacatgggccgcgtgggcacgggctttaccgac
cagatgcttcgcgacctgggcaagtcgctcgccaagggtggcgcgaaaaagcccgtcgtg
cgcatcgacgacatcgatccgatgctgcgcggcgcgctgtgggtcgcgcccaccgtggtc
gccgaggtctattaccggggcatcggcaacaagcacctgctgcgccagccgagcctgaag
gcgttgcgcgtggacaagtcgccggatgacctgcgcgattcggaccgctcgccacgcggg
aaaacgactcggcaggctaccggcgagctggcgatcacccaccccgaccgcctcgtctat
cccgacgacggcatcaccaagcaggacgtggtcgactactaccgcgccgtgatgccctgg
ctgctgccgcccatcgccgaccggccgacgtcgatcatccgtttccccgacggcatcgcc
aagcacggttttttccagaagcacgtgatgccagggctgaaacgcgtcggcaccgcgaag
ctcaaggaagactccggcgcccaggcggtctacctgtatccgaaggacgcggacggcctc
atcgaactggtgcagttcggcgccgtggaattccatccctggggttcgcacgtcgatacg
cccgacctcgccgaccgcgtggtcttcgacctggatccgggcgacggcgtcgaatggcgg
cgagtgatcgccgccgcgcggctgatgcgcgacgtgctgggccagctcggcctgcaatcg
ttcgtacgcaccaccggcggcaagggcctgcacgtggtggtgccgctcaaccccggcgcg
gactgggccacggtgaaacgcttcgcgcgcggggtggccgaaaccctcgccgccatgcac
ccgctggaattcgtcgccagcgccaccaagcgcatccgcaacggtcgcatctacatcgat
tacctgcgcaacgggcgcggcgccacggcggtggcctcgtactcgctgcgcggacgaccg
ggcgcgcccgtggccgtgcccttgcgctgggaggaactgggccgcctcgcgtcggcggcg
gcattcgacctgcattcggtgccgaaacggctttcccggcagaagcgcgatccgtgggaa
ggcatcgacgccgtacgccaggacctggccgccgtggaagcccggctcggcggcctttcg
gaggcacccgtcccccgtaagcgtttgcggaccaagtag
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