Luteibacter aegosomatissinici: L2Y97_07855
Help
Entry
L2Y97_07855 CDS
T09055
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
laeo
Luteibacter aegosomatissinici
Pathway
laeo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
laeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L2Y97_07855 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laeo03400
]
L2Y97_07855 (mfd)
Enzymes [BR:
laeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L2Y97_07855 (mfd)
DNA repair and recombination proteins [BR:
laeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L2Y97_07855 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
AroM
RecG_dom3_C
ERCC3_RAD25_C
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UPG96011
LinkDB
All DBs
Position
complement(1742874..1746323)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVALPRPPLPANAKTRRYWAVPHGSSWALEVAEAARAHDGLLVVVVRDTRSADNLESEL
GVFAGELPVLHFPDWETLPYDVFSPHPEVVSQRIATLYRLPAVKRGVLVVPVATLMQRIA
PRTHITGSGLVLRKGQKLDISAEQRRLEAAGYRNVPQVAEPGDFAVRGALIDIYAMGASE
PYRIELFDDEIESIRTFDTETQRSQHQVEGVDLLPAREFPVTDEAAKAFRTALRDRFPID
VRRCPLYQDMKEGVTPGGIEYYLPLFFAKTETLFEYIADNALFVLGEGVLESAAAFWQQV
GDRYDQRAHDIERPVLPPAEIYLPPDNLREQLNKQVRIDVVEKGHEHAVDLGTQPAPELP
LNRKGEEPGTALRHFLAHYPGRTLIAADSAGRREALIEQLAGAGMKPVNTESWKTFLAGD
EKFAISVASLEQGFALNEPALTVLTERELFGERVRTERRKRVGAARDPESIIKDLTELQI
GSPIVHIDHGVGRYQGLLTLDVGDMPGEFLTIEYAKGDKLYVPVAQLGLVSRYTGTAPEL
APLHSLGGDAWERARKKAAEKVRDVAAELLAIYAQRENKVGEALSVDRQMIEEFAATFPF
EETADQQRAIDAVIVDLAAPRAMDRVVCGDVGFGKTEVALRAAFAAATAGKQVAVLVPTT
LLAQQHYRNFADRFADWPVRVEVLSRFKSKKEVDNALERLADGQVDVMVGTHKLLQPDIR
FKNLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTLTATPIPRTLNMAMSGLRDLSIIATP
PAHRTAVRTLISTWQPALVREAIQRELARGGQVYFLHNEVESIERQARELGELIPEARIR
VAHGQMPERELEQVMADFHRQRFNVLVSTTIIESGIDIPTANTIIVNRADRFGLAQLHQL
RGRVGRSHHRAYAYLIVPDRKAMTPDAEKRLEALASLEELGAGFTLATHDLEIRGAGEML
GEEQSGQIQEIGFGLYTELLDRAVRALRSGKIPDFDLTSEHETEVELHLPALIPDDYLPD
VHTRLTLYKRIASARNDEGLRELQVEMIDRFGLLPDQAKCLFAVAQLKLMATPLGIRKVD
FGPNGGRITFREKPDIDPVALIRLIQQQPRIFKMDGQDKLRVIMELPGSAERIRTAQETL
VSLGARRPT
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtagccctgccccgcccgcccctgcccgccaacgccaagacccgccgctattgg
gccgtgccccatggctcgtcctgggccctggaagtggcggaggcggcccgcgcgcacgat
ggcctgctggtggtcgtggtgcgcgatacgcgcagcgcggataacctcgaaagcgaactg
ggcgtcttcgccggcgagctccccgtgctgcatttcccggactgggaaacgctgccctac
gacgtgttcagcccgcacccggaagtggtctcgcagcgcatcgccacgctgtaccgcctg
ccggcggtcaaacgcggtgtcctggtcgttccggttgccacgctcatgcagcgtatcgcg
ccgcgcacgcacatcaccggttcgggcctggtgctgcgcaagggccagaagctggatatc
agcgccgagcagcgccgcctcgaggcggcgggttaccgcaacgtgccgcaagtggccgag
ccgggtgatttcgcagtgcgcggtgcgctgatcgatatctacgccatgggtgcgagcgag
ccgtaccgcatcgaactgttcgatgacgagatcgaatcgatccgcacgttcgataccgag
acgcagcgctcgcagcaccaggtggaaggtgtcgacctgctgcccgcccgcgaattcccg
gtgacggatgaggccgccaaggccttccgcacggcgctgcgtgatcgcttcccgatcgat
gtgcgccgctgcccgctctaccaggacatgaaggaaggcgtgacgcccggcggcatcgag
tactacctgccgctgttcttcgcgaagacggaaacgctgttcgagtacatcgcggataac
gccctgttcgtgctcggcgaaggcgtgctcgaatccgccgctgccttctggcaacaggtg
ggcgaccgctacgaccagcgcgcgcacgatatcgaacgcccggtgctgccgcccgcggag
atctaccttccaccggacaacctgcgcgaacagctgaacaagcaggtccgcatcgatgtc
gtcgagaaaggccacgaacacgccgtggacctgggcacgcagccggcccccgagctgccg
ctcaaccgcaagggcgaagagcctggcacggcgctgcgccatttccttgcccattacccc
ggccgcacgctgatcgccgccgattcggcaggccgccgcgaagcgctgatcgagcagctc
gccggcgcaggcatgaagccggtgaacaccgagagctggaaaacgttcctcgctggcgat
gaaaaattcgccatcagcgtggcatcgctcgaacagggctttgccttgaacgagcccgca
ctcaccgtgctgaccgagcgcgaattgttcggcgagcgcgtgcgcaccgagcgacgcaaa
cgcgtcggcgcggcgcgcgatcccgaaagcatcatcaaggacctgaccgagctgcagatc
ggctcgcccatcgtgcatatcgaccatggcgtgggccgctaccagggcctgttgaccctg
gatgtcggcgacatgccgggtgagttcctcaccattgaatacgccaagggcgacaagctg
tacgtgcccgtggcgcagctgggcctggtcagccgctacaccggcaccgcacccgaactg
gcgccattgcattcgctgggtggcgatgcctgggaacgcgcccgcaagaaggccgccgag
aaggtccgcgacgtggccgccgagctgctggcgatctacgcccagcgcgaaaacaaggtg
ggcgaggcgctgtcggtggatcggcagatgatcgaagagttcgccgccaccttcccgttc
gaggagacggccgaccagcaacgggcgatcgatgccgtgatcgtcgacctggccgcgccg
cgtgccatggatcgcgtggtctgcggtgacgtgggcttcggcaagaccgaggtcgcgctg
cgcgccgcgttcgccgccgccaccgccggcaagcaggtggccgtgctggtaccgaccacc
ctgctcgcgcagcagcactatcgcaacttcgcggatcgcttcgccgactggccggtgcgc
gtggaggtcctctcccgcttcaaatcgaagaaggaagtggataacgcgctggagcgcctg
gccgatggccaggtggatgtcatggtcggcacgcacaagctgctgcagcccgatatccgc
ttcaagaacctgggcctggtcatcgtcgatgaagagcagcgctttggcgtgcgccagaag
gagcagttgaagaagctgcgcgccgaggtggacctgctcaccctcaccgcgacgccgatc
ccgcgcaccctgaacatggccatgagcggcttgcgcgacctctccatcatcgccacgcca
ccggcgcaccgcacggccgtgcgcacgctgatctcaacctggcagccagccctcgtccgc
gaggcgatccagcgcgagctggcccgtggcggccaggtgtatttcctgcacaacgaagtg
gaatcgatcgagcgccaggcccgcgaactgggtgaactcattcccgaagcacgcatccgc
gtggcccacggccagatgccggagcgcgaactggaacaggtcatggcggatttccaccgc
cagcggttcaacgtgctggtgtcgaccaccatcatcgagtcgggtatcgacatcccgacc
gccaacaccattatcgtgaatcgcgccgatcgcttcggcctggcacagctgcaccagctg
cgtggccgcgtgggccgttcgcaccaccgcgcatatgcttacctgatcgtgcccgaccgc
aaggcgatgacccccgatgccgagaagcgcctcgaagcgctggcctcactcgaggagctg
ggtgccggcttcaccctcgcgacccacgatctcgagatccgtggcgcgggcgaaatgctg
ggcgaggaacaatccggccagatccaggagatcggctttggcctctacaccgagctgctg
gatcgcgcggtgcgtgcattgcgctcgggcaagatccctgacttcgatctcacctcggaa
cacgagaccgaagtcgaactgcacctgccggcgctgatccccgacgattacctgcctgac
gtgcacacccgcctgaccctgtacaagcgcatcgccagcgcacgtaacgacgagggcctg
cgcgagctgcaggtggaaatgatcgatcgcttcgggctgctgcccgaccaggccaagtgc
ctgttcgccgtggcccagctgaagttgatggccacgccgttgggtattcgcaaggtcgat
ttcggccctaatggcgggcgcatcacgttccgtgaaaagccggatatcgatccggtggca
ctcatccgcctgatccagcaacagccgcgcatcttcaagatggatgggcaggacaagctg
cgcgtgatcatggagctgcccggcagcgccgagcgcatccgcacggcgcaggaaacgctg
gtgtcgctgggtgcgaggcgcccgacgtaa
DBGET
integrated database retrieval system
