Luteibacter aegosomatissinici: L2Y97_21580
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Entry
L2Y97_21580 CDS
T09055
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
laeo
Luteibacter aegosomatissinici
Pathway
laeo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
laeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L2Y97_21580 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laeo03400
]
L2Y97_21580 (ligD)
Enzymes [BR:
laeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L2Y97_21580 (ligD)
DNA repair and recombination proteins [BR:
laeo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L2Y97_21580 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UPG94375
LinkDB
All DBs
Position
4820587..4822527
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AA seq
646 aa
AA seq
DB search
MAIRKTLATLTTAAGALKGARKGKPGTAYFAPQLARLREAPPQGDTWLHEVKWDGYRILT
GIANSEVNLWSRNALPWNHRIPQIVRAIEALGLESARLDGELIALDSHGRSDFNALQKTL
AGEANAPLVYMLFDMPFLQGYDLSRVALIERKALLERMLAHAPAHLRFSAHTIGHGDKAF
AVAMTQKLEGILSKRIDGPYHSGRNDDWLKIKRLEADEYAVIGYTPAKGSRLSFGSLLLA
RPGTKGRWTYVGRVGTGFTDEMLRKLGKTLARGGQKTPPVPLDGIDPLLRGALWVTPTVV
AEVYYRGIGNLGLLRQPSLKALRIDKAPRDLRDSDRRTAASPDPKPSARKRPVATNEITI
THPDRVVYPDDGITKQDVADYYKAVMPWFLPPVADRPMPMLRCPGGIGEHCFFQKHMIAG
LHHVGSAKLKEETGTQAVYLYPKDEAGLMELVQFGAIEFHPWGSHAKRPDVADRVIFDLD
PGEGVAWKRVVAAARMVRNFLKQLGLVSFVRTTGGKGLHIVVPLSPGADWETVRTFARGF
ADALAQAHPDEFVATAAKKVRSGRIYLDYLRNGRGATAVASYSLRARPGAPVAVPLRWEE
LGKLTSGADFTIHTVPKRLGRLKKDPWEGIDKVRQSLDDVVERLGL
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggccatccggaagacactcgccacgctcaccacggcagccggagcccttaagggggcg
cggaaaggcaagccaggcacggcgtacttcgcgccacagctcgcccgcttgcgcgaggca
ccgccgcaaggcgatacgtggctgcatgaagtgaagtgggacgggtatcgcatccttacc
ggcatcgccaacagcgaagtgaacctgtggtcgcgcaacgccctgccctggaatcaccgc
attccacagatcgtgcgcgccattgaagcgcttggcctggagagcgcacggctcgatggc
gaactcatcgcactcgactcgcacggccgcagcgatttcaatgcgcttcagaagacgctc
gcaggggaagccaacgcaccgttggtctacatgctgttcgatatgccgttcctgcagggc
tatgacctgtcgcgcgtcgcgctgatcgaacggaaggccctgctcgaacgcatgcttgcg
cacgccccggcccacctgcgtttcagcgcacacacgatcgggcatggcgataaggcgttt
gcggtcgccatgacacagaagctcgagggcatcctctccaagcgcatcgacgggccttac
cacagcgggcgcaacgacgactggctgaagatcaaacgccttgaagcggacgaatatgcc
gttatcggctacacgcctgcgaagggctcgcgactttcgttcggttcgctgctgcttgcc
aggcccggcacgaagggccgctggacctacgtgggtcgcgttggcaccggctttaccgac
gagatgctgcgcaagctcggcaaaacgcttgcacggggcggccaaaagaccccgcccgtg
ccgctggacggcatcgatcccctgctccgcggcgccctctgggtcacaccgaccgtggtg
gccgaggtttattaccgtggcatcggcaaccttggtctgctccgccagcccagcctgaaa
gcgctgcgtatcgacaaggcacccagggatctgcgcgatagcgaccgtcgcacggcagca
tcacccgacccgaaaccgtccgcgaggaaaaggcccgtggcgaccaacgagatcaccatc
actcaccccgaccgggtcgtgtatccggacgatggcatcaccaagcaggatgtcgccgac
tactacaaagcggtgatgccgtggttcctgccgccggtggctgaccggcccatgccgatg
ctgcgttgcccaggcggcatcggtgagcactgcttcttccagaaacacatgatcgccggc
ttgcatcacgtgggttcggcaaagctcaaggaggagaccggcactcaggccgtttatctg
tacccgaaggacgaggccggcctcatggaactcgtgcagttcggcgccatcgagttccac
ccctggggctcgcatgccaaaaggcctgacgtagccgaccgcgtgatcttcgaccttgac
ccgggtgaaggcgtcgcgtggaagcgcgtcgtcgcggccgcacgcatggtgcggaatttt
ctcaagcagctcgggctcgtatccttcgtccgcaccacgggcggcaaaggcctgcacatt
gtggtccccctctcgccaggcgcggactgggagaccgtgcgcaccttcgcccgcgggttt
gcggacgccctggcccaggcgcatcccgatgaattcgtcgccacggcggcaaagaaagtg
cgcagcggcaggatctacctggattacctgcgtaatggccgcggggcgacggccgtcgcc
tcgtattcgctgcgcgcacgccccggcgcgccggtcgcggtaccgctgcgttgggaggaa
ctgggcaagctcacctccggcgcggatttcaccatccacaccgtccccaagcgcctgggg
cggctgaagaaagacccctgggaaggcatcgacaaggtgcgccagagcctggatgacgtc
gtggagcggctgggcctgtag
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