Lysinibacillus agricola: FJQ98_14410
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Entry
FJQ98_14410 CDS
T07480
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lagr
Lysinibacillus agricola
Pathway
lagr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lagr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FJQ98_14410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lagr03400
]
FJQ98_14410
Enzymes [BR:
lagr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FJQ98_14410
DNA repair and recombination proteins [BR:
lagr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FJQ98_14410
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QQP10476
LinkDB
All DBs
Position
complement(2982431..2984251)
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AA seq
606 aa
AA seq
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MKPMLLTEALETPIGEDWMYETKYDGFRCMLVWDEQPMLISRNGNNLNHLFPEILDFCKS
LFDQVKAFLPLTFDGELVYLTNDFKSDFSLVQKRGRMQNKEVIAAHAQAFTFHYIAFDLL
RYKGEPLTNKYLKTRKQQLSKLFTTLKLPETINYEDPRPLQAISSVEHSEPLWHAIRVNN
GEGMVAKKKTSKWIGDTRSTHWLKIKNWRYVTVIVTKYDHGNGYFHGSVYRQDELVELVI
FKHGMSEEERKTLIAFFQANGQRNNEIWELEPSICVDIACIDFDGSKCREPRFQVFRLEM
LPEDCQWQHMQRQLFPIPDTVQITHPDKPVWPEIGITKDGYLHYLQMISPYVLPFLRNRP
LTLIRFPHGVPGESFYQKSSPEKIPEFVSTGWMDEIHYLVCNNLEALLWLGNQLALELHI
PFQTLQTEHPTEIVFDLDPPSVDQFSLAITGALDLKEIIDYFKLQSFVKTSGGKGLQLYI
PLPENAFSYEEVRVFTEFVCRFLCEQKPGLYTIERLKKNRHQKLYLDYVQHAEGKTIIAP
YSTRGNEKGLVATPLHWEEVNEHLTPDIFTIPAVLERMKRVSNPFKDFRQVGESQDFQSV
LDHLKE
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatgctattaacggaagcgcttgaaacacctattggtgaagactggatgtat
gaaacaaaatatgatggatttagatgtatgttagtatgggacgaacagccaatgttaata
agcagaaatggcaataacttaaatcacttgtttccagagatacttgatttttgtaagagc
ttattcgatcaagttaaagcgtttttaccattaacatttgacggggaattagtttattta
acgaatgattttaaaagtgatttttcgcttgtccaaaaaagaggtaggatgcaaaacaaa
gaagttattgctgcgcatgcacaagcctttacttttcattatattgcttttgatttactg
cgttataaaggggagccgctgacaaataagtatttaaaaacacgtaaacagcaactctca
aagctttttacaaccttaaagctccctgagactatcaattatgaggatccacgccctttg
caagcgattagcagtgtggagcatagtgagccactttggcatgctattagggtaaacaat
ggggaaggaatggttgctaaaaagaaaacaagtaaatggattggagatacgcgctctaca
cattggttaaaaatcaagaattggcgctatgtaacggtcatagtcaccaaatatgatcat
ggaaatggctattttcatggctctgtttatcgacaggacgagcttgttgaattggttatt
tttaaacatggaatgtcagaggaagagcgtaaaacactcattgctttttttcaagcgaat
ggacagaggaataatgaaatatgggaactggagccatccatttgtgttgatatagcctgt
attgattttgatggaagcaaatgtcgagaaccgcgtttccaagtatttcgactggagatg
ttgccagaggattgtcagtggcagcacatgcagcgtcaacttttccctattccagatact
gttcagattacgcatcctgataagcctgtttggcctgaaatcggtattacgaaggatggt
tacttgcactatttgcaaatgatttctccgtatgtattaccttttcttcgaaataggccg
cttacgttaattcgatttcctcatggagtgccgggtgaaagcttttatcaaaaaagtagt
cctgagaaaatacctgaatttgtttcaacaggatggatggacgaaattcattatcttgta
tgtaacaaccttgaagcattattatggctaggcaatcagctagcattagagctacacata
ccattccaaacgttgcaaacagagcatcctactgagattgtcttcgatctagatcctcct
tctgttgatcaattttcacttgccatcactggagcactggatttaaaggaaattatcgat
tattttaagctacaatcttttgttaaaacatcgggaggaaaagggttgcagctatatata
ccgttacctgaaaatgcattttcctatgaagaggtgcgagtatttactgaatttgtttgt
cgttttttatgtgagcaaaaaccgggattgtatacgattgagcgtttaaagaagaataga
catcaaaaattatatttagattatgtgcagcatgcagaagggaaaacaattattgctcca
tattcaactcgtggtaatgaaaagggcttagtggcaacgccattacattgggaggaggtc
aatgagcacttaacacctgatatctttaccattcctgctgtactggagcgaatgaaaaga
gtaagcaacccatttaaagatttccgtcaagtaggggagagccaggattttcaatcagtc
ttagatcatttaaaggaataa
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