Lacimicrobium alkaliphilum: AT746_11375
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Entry
AT746_11375 CDS
T04189
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lal
Lacimicrobium alkaliphilum
Pathway
lal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AT746_11375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lal03400
]
AT746_11375
Enzymes [BR:
lal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AT746_11375
DNA repair and recombination proteins [BR:
lal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AT746_11375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Enamelin
Motif
Other DBs
NCBI-ProteinID:
ALS98811
UniProt:
A0A0U2QMT5
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All DBs
Position
2499241..2502714
Genome browser
AA seq
1157 aa
AA seq
DB search
MSSIFSPDLPAKAGDHQQWGNLQGSSLALAIANASERVKGSVLLITADTPSALKLARELQ
SFVSEIEVKIFPDWETLPYDNFSPHQDIISQRLETLFHLTQPQPCIYVVPVNTLLQRLAP
VDYLAKYLLLLEQGQHLDLDSFRQGLERAGYTAVSQVMSHSEFCVRGSIIDLFPMGSKTP
YRIDLFDDEIDSIRIFDPDSQRSEDKVEQIRMLPAHEFPTDKEAIDRFRLQFLDRFDASN
ARESVYHQVSKGLMPAGIEYYLPLFFEHTATLFDYLHQDSLVLMHGDLINAAEFYWADVQ
ERYEQHKYNPLKPLLSPAEIFLRVEELFNLIKQRARISVGHQSLEPKAGRTNFATTALPD
IAVKPQLKSPMASLQQQLKVWQQQGVRVLFSVESQGRRESLLEMLKKIQISPKEVSDLGT
FLCGHQQLGIVISDLEHSFMLDESDGRLVLITETELLGHKISQRRLRKKQQATDEAAVIR
NLAELNIGQPVVHLDHGVGRYLGLQTLDAGGIATEYLTIEYANQAKLYVPVSSLHLISRY
SGGDLDSAPLHHLGTETWAKARKKAAEKVRDVAAQLLDVYARRAAKPGFAIKINWDEYES
FANSFPFEETADQQQAINAVIQDMGSPIAMDRLVCGDVGFGKTEVAMRAAFLAANGGKQV
AILVPTTLLAQQHYENFKDRFADWPFRIEVMSRFGSGKEHKEIIQGLNDGKVDIVVGTHK
LLQDDVKFAELGLVIIDEEHRFGVRQKEKFKALRADVDILTLTATPIPRTLNMALSGMRD
LSIIATAPAKRLAIKTFVRQRDKQLIREAIMREILRGGQVYFLHNEVETIDKTAAEIEEI
VPEARVGIGHGQMRERDLERVMSDFYHQRFNVLVCSTIIETGIDIPSANTIIMDRADHLG
LAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAHKRLEAIASLEDLGAGFALATHDLEI
RGAGELLGDDQSGQIATVGFSLYMEMLDKAVEALKEGKEPSLDESLSSHTDIELRIPALL
PEDYIHDVNIRLSLYKKIANCKNKDELDDVRVELIDRFGLLPDAAKNLMTIAELKLEAKK
VGISKIEASSQGGFVEFDQDTPVDPGFIIQLLQSQPAVYKLDGPQKLRFNIKTEQHQQRV
TLVQDMLTQFKRKLQAA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtattttcagtcccgacctgccggcgaaggcaggagatcatcagcaatggggt
aacttgcagggcagcagcctggcactggccattgctaacgcctcagaaagggtcaaagga
tcggtattgctgatcaccgctgataccccctcagcactaaagctagcacgcgaattacaa
agttttgtcagcgagatagaggtgaagatcttcccggactgggaaaccctgccctatgat
aatttttcacctcatcaggatattatttcccagcgcctggaaacgctttttcatctgact
cagcctcaaccctgtatttacgtggtgccggtcaataccctgttgcagcgactggcgcct
gtggattatctggctaaatacctgctgttgcttgagcagggccagcatctggatctggac
agcttccgccagggtctggagcgggccggttacacggcggtcagtcaggttatgagccat
agtgaattttgtgttcgcggcagtatcattgacctattccccatgggcagtaaaacgccc
tatcgcattgatctgttcgacgatgaaatagacagtattcggattttcgatcccgattca
cagcgctctgaagataaagttgagcagattcggatgctgccggcccatgaattccccacc
gacaaggaagccattgatcgcttccggctgcagtttctggacagatttgatgccagcaat
gcccgcgagtcggtttaccatcaggtcagcaaggggctgatgccggccggtatagagtat
tacctgccgctgtttttcgagcacactgccaccctgtttgattacctgcatcaggacagc
ctggtgctgatgcacggtgatctgatcaatgccgcagagttttactgggccgatgtgcag
gaaaggtacgaacagcacaaatataacccgcttaaaccactgctcagcccggcagaaatc
ttcctgcgggtggaagagctgtttaatctgattaagcaacgcgccagaatcagcgtcggc
catcagagcctcgaacccaaagccggcagaacgaatttcgccaccactgccctgcctgac
atcgcggttaagcctcagcttaaaagcccgatggcgtcgttgcagcaacaacttaaggtt
tggcaacagcaaggggtcagggtgctgtttagtgtcgagtcccaggggcgtcgggaaagc
ctgctggagatgctgaaaaagatccagatcagcccgaaggaagtctctgatcttggcact
tttctgtgtggtcatcagcaactgggcatcgttatcagcgatctcgaacacagctttatg
ctggatgaaagtgacggccggctggtactgatcacagaaaccgaactgctgggtcataaa
atcagtcagcgccgtctgcgcaagaagcaacaggccaccgacgaagccgcggtgatccgg
aatctggcagaactcaatatcggtcagcctgtggtgcatctggatcacggtgtgggtcgc
tatctgggactgcaaacactggatgccggcggtattgccacagaatacctgactattgag
tatgccaatcaggccaagctctatgtgccggtatcttctttgcacctgatcagccgctac
agtggtggtgatctggactcagctcccttgcatcatctgggtaccgaaacctgggccaaa
gcccgtaaaaaagccgccgagaaggttcgtgatgtggcggcacaattacttgatgtgtat
gcccgcagggccgccaaacctggttttgccatcaagattaactgggatgaatacgaaagc
ttcgccaacagttttccctttgaagaaactgccgatcaacaacaggctattaatgcggtg
attcaggacatgggcagccccatcgccatggacagactggtatgcggcgatgtcggcttt
ggcaaaactgaagtggccatgcgcgctgcatttctggccgccaatggcggcaagcaggta
gcgattctggtgcctaccaccctgctcgcccagcagcattacgagaatttcaaagaccgc
ttcgccgactggccgtttcgtatcgaagtgatgtcccgctttggcagcggcaaagaacat
aaagagattattcagggactgaacgacggcaaagtggatattgtggtcggtacgcataag
ttattgcaggatgacgttaaattcgccgaactcggtctggtcatcatcgatgaagaacac
cgcttcggtgtgcgccaaaaagagaagttcaaggcgctgcgcgccgatgtggatattctg
accctgaccgccacccccataccccgcaccctgaatatggctctgtcgggaatgcgcgat
ttatccattatcgccaccgcaccggccaaacgcctggcgattaagacctttgtacgccag
cgggataaacaactgatccgcgaggccatcatgcgtgaaattctgcgcggtggtcaggtg
tattttctgcacaatgaagtggaaaccatcgacaaaacagccgccgaaatcgaagaaatc
gtccccgaagccagagtgggtatcggccacggtcagatgcgcgaacgggatctggagcgg
gtgatgtcagatttttaccatcagcgttttaatgtgctggtatgcagtaccattatcgaa
accggtatcgacattccctcggccaataccattatcatggacagggccgaccatctgggg
ctggcacaattacaccagttacggggacgggttggccgttctcatcatcaggcctatgcc
tacctgctcacccctcatcccaagcgcatgaccaaagatgcccataaacgtctggaggcc
atcgcttcgctggaagatctcggcgccgggtttgcactggccacccatgatctggaaatc
cgcggtgccggtgaactgctcggtgatgatcagtcaggccagattgccaccgtgggtttc
tcactctatatggagatgctcgacaaagccgttgaagcccttaaagaaggcaaggaaccc
tctctggacgaatcactgtcctctcacacagatatcgaactgcgtattccggccctgtta
cccgaggattacatccatgatgtcaatattcgcctgtcgctgtacaagaagatcgccaat
tgcaaaaataaagacgagctggacgacgtcagggttgagctgattgatcgttttggtttg
ttgcccgatgcagcgaaaaacctgatgacaatagccgaactgaagctggaagcgaaaaag
gtcggaatcagtaaaatagaagccagcagccagggcggatttgtcgaatttgaccaggat
accccggttgatcccggttttatcatccagttgctgcagtcccagcccgctgtctacaaa
ctcgacggtccccaaaaactcaggttcaatatcaaaacagaacagcatcaacagcgtgtt
acactggtacaggacatgcttactcaatttaaacggaaattacaggcggcctga
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integrated database retrieval system
