Lactobacillus amylovorus GRL 1112: LA2_04350
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Entry
LA2_04350 CDS
T01371
Name
(GenBank) metallo-b-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lam
Lactobacillus amylovorus GRL 1112
Pathway
lam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA2_04350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lam03019
]
LA2_04350
Messenger RNA biogenesis [BR:
lam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LA2_04350
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
DUF4453
Lactamase_B_6
ODP
Motif
Other DBs
NCBI-ProteinID:
ADQ58843
UniProt:
E4SI44
LinkDB
All DBs
Position
complement(871193..872875)
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AA seq
560 aa
AA seq
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MRIKNNEVAVYAIGGLHEIGKNMYCVQYQDEIIIMDCGIKFPEDDLLGINYVISDYSYLV
KNRKKIKALVVSHGHEDHIGGIPFLLEKIPEIPVYATPFALSLIKGKLEEHGILKTTELH
EEHEDTVLKFKKLSVSFFRTTHSIPDTLGIAVHTPLGAVVFTGDFKFDLTPVMNQPAPDF
QKMAKLGNEGVLALLSDSTNAEVTQFTKSERFVAQSLHNIITGIHGRIIFATFASNLYRV
STAIQAAIDTGRKVAIFGRSMENGVDNGIDLGYLHVPKDLIVDADEINKLPPDKVMILCT
GSQGEPLAALSRIANGTHRQITLQPGDTVIFSSNPIPGNTLSVNHLINKLMEGGANVIHG
RVNNVHTSGHGGQEELKMMVRLTKPKYMIPVHGEYRMQVIHTQLAQEAGVPAENTFVLSN
GEVVCFGPNGARIAGRIPAGDVYVDTSGTADVGNVVVHDRQILSEEGLVVAVATVDYKHK
RVLAGPDILSRGFVYMRESTELISQAQKHVYHVLRNEMAKSDKPKESEIKKAITENLSDF
LYSKTERRPMILPIIIEKNS
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
gtgcgaattaaaaataatgaagtagccgtttatgcaatcgggggtttgcatgaaattggc
aagaatatgtattgtgtgcagtaccaggatgaaattatcatcatggactgtggtattaaa
ttccccgaagatgatttattaggtatcaactacgtaatctcagattactcctacctagtt
aaaaatcgtaagaaaatcaaggcgctagtagttagtcacggacacgaagaccacattggt
ggtattccattcttattggaaaagatccctgaaattccagtttatgcaactccatttgcc
ctatccttaattaaaggtaagttggaagaacacggaattttaaagacaaccgaactacat
gaagagcatgaagacactgttttgaagttcaagaaactttccgtttcattctttagaaca
actcactcaattcctgatactttgggaatcgctgttcatacaccacttggtgctgttgtc
tttaccggtgacttcaagtttgacttgactcctgtaatgaatcagccagctccagatttc
caaaagatggctaaattaggaaacgaaggtgtgcttgcccttctttcagactcaactaac
gctgaagttacgcaatttacgaagtctgaaagattcgttgcacaatcgcttcataatatc
attactggtattcatggcagaatcatctttgccactttcgcttctaacctttaccgtgta
tctactgcaattcaagcagcaattgataccggcagaaaggtggctatcttcgggcgaagc
atggaaaatggtgtcgacaatggtattgatttaggctacttgcatgtacctaaggattta
attgttgatgctgatgaaattaacaaattaccacctgacaaagtgatgatcttatgtact
ggttcacagggtgaacctttagcagctttatctagaattgctaacggtactcacagacaa
atcactttgcaacctggtgatacagtaatcttctcttctaatccaattccaggtaatacg
ttgagcgttaaccacttaattaacaaattaatggaaggtggagccaatgtaattcacgga
cgtgtaaacaacgtccacacttctggacacggtggtcaagaagaacttaagatgatggtt
cgtttaaccaaacctaagtacatgattcctgttcacggcgaatacagaatgcaggtaatt
cacacccaacttgctcaagaagctggtgttcctgcagaaaatacattcgttctgtctaac
ggtgaagttgtctgctttggtccaaacggtgcaagaattgctggtcgcatccctgccggt
gatgtttatgttgatacatccggtacagcagatgttggcaatgtcgtagttcacgaccgt
caaattctttcagaagaaggtttagtagtagctgtagctacagttgactacaagcataaa
cgcgttcttgccggacctgatattttaagtcgtggtttcgtttatatgagagaatcaact
gaattaatcagtcaggctcaaaaacatgtctaccatgttcttagaaacgaaatggcaaaa
tcagataaacctaaggaaagcgaaattaaaaaggcaattaccgaaaacttatctgacttc
ctttactcgaagactgaaagacggccaatgattttaccaatcatcatcgaaaaaaatagc
taa
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