Lupinus angustifolius (narrow-leaved blue lupine): 109328274
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Entry
109328274 CDS
T04664
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
109328274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lang03400
]
109328274
Enzymes [BR:
lang01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109328274
DNA repair and recombination proteins [BR:
lang03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
109328274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
RTT107_BRCT_5
T_Ag_DNA_bind
Motif
Other DBs
NCBI-GeneID:
109328274
NCBI-ProteinID:
XP_019417212
LinkDB
All DBs
Position
LG15:923740..938760
Genome browser
AA seq
1167 aa
AA seq
DB search
MTEQTKFSVLCSLFTWTQRTKSSFKKRSKFRKFLDSFCTDGNFFPAIRLILPNLDRERGT
YGLKEHVLATCLIDALAISKDSDDAVRLINWRKGGAKTGSNVGNFALVATEVLQRRQGTA
SGGLTIKELNDLLDQLSSSENRAEKTLVFSTLIQKTNAQEMKWIIMIILKDLKLGFSEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATDAWK
KLHGKEVVVECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYAHAMSEIITQNIIVDRCILD
GEMLVWDTFSNRFAEFGSNQEIAKAARDGLDGDRQLCYVAFDILYFGDTSVIHQTLKERH
EILRKVLRPVKGRLEILIPNDGLNSHRSAGEPCWSFIAHNVDEVERFFKATIENRDEGIV
VKDLSSKWEPSDRSGKWLKLKPEYVHPSSDLDVLVIGGYYGSGRHGGEVAQFLVGLAERP
SPNTHPKRFVSFCRVGTGLSDDELDALVTKLKPYFSKYEYPKKRPPSFYQVTNHSKERPD
VWVDSPEKSVILSITSDIRTIDSEVFAAPYSLRFPRIDRVRYDKPWSECLDVQSFIELVH
SSNGTTQWNTGFGKEQDSEPKKMKSSTRGQKKILSIVPSHLIQTDVSNVKGGSLIFSNMM
FYFVNVPPSYSLESLHKMVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHCT
WVLACYEQKKLVPLQPKYFLFLSEQTKNKLQEEIDQFSDSYYLDLSLKDMIQLLSNIHRP
EDISTIDHYKKKYCPKDKWCFFYGCSIYFHTAIPSLKGDWEVLLGISLRRFRLEILMGGG
KVTDNLTRATHLVVLSVPRYHTDIEEIQRSFTSVERKFLQSKKLNIVKSQWLEDCLDHGQ
RLPEETYSLKPLGTEESTDEDIEPDLALEAHMGEDNVTDQNISVSDKEVKQRTVKTAHGE
GKAFMSQEKGGQRKRGRPPGRGSKNAKPAGNQAQRARPRTVRKRAKICEHESDENDSHDK
KPCEEIDTAKGSVDFYRRHSEPQETEKHTTSEVSETRESLERNKEVMCEDLKDSEPRRMF
VPEIEMTNNNNDQSSEVTDKLEILTDPVQSMLFDMIPSLATKKVEEPKNHNIGEEKPSEI
INAEPSTTTKKKKVSYKDVVNDFLKDG
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaaacaaagttcagcgttctgtgcagtctcttcacatggacacagagaaca
aagtcttcgttcaagaaacgttccaagtttcgcaaattcctcgattcattttgcaccgat
ggtaacttcttccccgctattcgcttgattctccctaaccttgatcgcgaacgaggcacc
tatggcctcaaggagcacgtgctcgccacgtgccttattgatgcccttgccatttctaaa
gactccgacgacgccgttcgactcattaattggcgtaaaggtggcgccaaaaccggttcc
aatgttggtaactttgcccttgttgccaccgaggtgctgcagcgtaggcaagggacagct
tcaggtggattgacaataaaggagctgaatgacttgcttgatcagttgtcttcgagtgaa
aacagggctgagaagactttggtattttctacccttatccaaaagacaaatgcacaggaa
atgaagtggatcatcatgataatcctcaaagatctaaagcttggatttagtgaaaaaagc
atttttcatgaattccatccagatgctgaagatttgtttaatgtgacatgtgacttaaaa
ttggtttgtgaaaagctgagggatcggaaccaacgtcataagcgtcaggatattgaagtt
ggaaaagctgtacgccctcaattggctaagagagttgctaatgcaactgacgcatggaag
aagctacatgggaaggaggtagttgttgaatgcaaatttgatggtgatcgcattcaaatt
cataaaaatggaacggagatacactacttctccaggaactttcttgatcattctgaatat
gcacatgcaatgtcagaaatcataacacagaacattattgttgataggtgcatacttgat
ggtgaaatgttggtctgggacacattctcgaatcgttttgccgagtttggctcaaatcag
gaaatagcaaaggcagcaagggatggacttgacggtgatagacagttatgctatgtcgca
tttgatatcctttattttggagatactagtgtaattcatcaaactttgaaggaaaggcat
gagattctccgtaaagttttgaggccagtgaagggtcgattggaaattttaatacctaat
gatggtctcaatagccatcgttctgctggtgaaccatgttggtcatttattgctcataat
gtggatgaagtggagagatttttcaaagccaccatagagaatagagatgagggtattgtt
gtgaaagacctcagttccaaatgggaacctagtgatcgtagtggaaagtggctaaagtta
aagcctgaatatgttcatcctagttctgatctggacgtacttgtcataggaggctactat
ggatctggacgacatggaggagaggttgcccaattcttggtgggccttgcagaacgtcca
tccccaaatacacatcccaagcgatttgtctccttttgcagagttggtactggactttct
gatgatgaacttgatgctttagttaccaaactaaaaccttacttcagtaagtatgaatat
cccaagaagaggccaccaagtttttatcaagttactaatcattcaaaagaaagacctgat
gtgtgggttgatagcccagagaaatcagttattctttctataaccagtgatatccgaact
atagattctgaggtatttgctgcaccttacagcctgagatttcctcggattgacagggtg
aggtacgacaaaccctggagtgaatgccttgatgtacaatcatttatagaactagtgcat
tctagcaatggcaccacacagtggaatacaggatttggcaaggaacaggatagtgaacca
aaaaaaatgaaatcttctacaaggggacagaagaaaatattgtccattgttccatctcat
ttaattcagactgatgtttccaatgttaaagggggctccttaatattttcgaatatgatg
ttttactttgttaatgtgccaccatcttattctctcgagtccttgcacaagatggttgct
gaaaatggaggaactttctcgatgaatttgaataactcagtcacccattgtgttgcagca
gatagcaaggggtttaaattcgaagcagctaaacgtcatggtgatataattcattgtact
tgggtattagcttgctatgaacaaaagaagcttgtccctcttcagccaaagtacttcctc
ttcctatctgagcaaacaaagaataagttacaagaagaaatcgaccagttctcagactct
tactacttggatctttctcttaaagacatgatacagctcttaagcaatattcataggcca
gaagatatcagtactatagatcattacaagaaaaaatattgcccaaaggataagtggtgc
ttcttttatggatgctctatttatttccacactgcaataccatcattaaaaggagattgg
gaagttctattgggaatttctttgagaagattcaggcttgaaattctcatgggtggtgga
aaagttactgataatcttactcgtgcaacccatttagtggttttgtcagtgccaagatat
cataccgacattgaagaaatacagagaagtttcacttcagtagagaggaaatttctccag
agcaagaagttgaatatagttaaatcccagtggttagaagattgtttggaccatggccaa
agattaccagaagaaacttatagcttgaagccccttggaacagaggagtcaacagatgaa
gatatcgaacctgacttggcgctagaggctcatatgggtgaagataatgtaacagaccaa
aatatatctgtctctgacaaggaagttaaacagagaactgtgaaaactgctcatggtgaa
ggtaaggccttcatgtcccaagagaagggtggccaaaggaaaagaggaagacctccaggc
agaggcagtaaaaatgcaaaaccagctggcaaccaagctcaaagagcacgaccgcgaact
gtgagaaagcgtgctaaaatatgtgaacatgaatcagacgaaaatgattctcatgacaaa
aaaccatgcgaggagattgacactgccaaaggaagtgttgatttttaccggagacattca
gaaccccaagagactgagaagcacacaacttctgaagttagtgaaacaagagaaagtctc
gagcgaaacaaggaagttatgtgtgaggatttgaaggacagtgaacccagaagaatgttt
gttccggaaattgaaatgactaacaacaacaatgaccaaagcagtgaagtgactgacaaa
cttgaaatattgactgatccagtgcagtcaatgttatttgacatgattcctagccttgct
acaaagaaagttgaggaacctaagaatcataatattggagaagagaagccatcagaaatc
atcaatgcagagccttcaacaactacaaagaagaagaaagttagctataaggatgttgtt
aatgactttctcaaggatgggtag
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