Legionella antarctica: TUM19329_24850
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Entry
TUM19329_24850 CDS
T07713
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lant
Legionella antarctica
Pathway
lant03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TUM19329_24850 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lant03400
]
TUM19329_24850 (mfd)
Enzymes [BR:
lant01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TUM19329_24850 (mfd)
DNA repair and recombination proteins [BR:
lant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TUM19329_24850 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
DUF1474
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BCA96124
UniProt:
A0A6F8T614
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All DBs
Position
2586795..2590238
Genome browser
AA seq
1147 aa
AA seq
DB search
MVTNTLLFQTTKSKQIWGQLYGSSLALALAEYCQQTPGVKLLIARDNLSASQLQDELQFF
LNEQNTHQELLFFPDWETLPYDQFSPHQDIISERLHTLSRVQQVTNAIIITSASTLMHKL
CPPEFLNQYALMLREGQKLELNSFRTQLQQSGYHCVNKVLEHGEFALRGSIIDVYPMGSG
LPFRIELFDDEIESLREFDTETQRTIEKISEINVLPAREFPLNEQSQTLFRKAFRELFPG
NPSQCPIYEAITNGQFPSGIEYFLPLFFEKTVTFFDYLPQNAKICLIEDIQENAEQFWQE
LTERYEQRRYDITRPILAPAACFINPTELLTQANTYEQLRLFHKPSERKGALNFDIAIAP
QLPIDRKTPEPLSLLREYCANTARRYLIIVESAGRREVLLDLLKLSGLAPKVQPCWQDFI
NDNVPLNITTGPLIYGCELSNKNIVLIVESQLFGEQSTPQRRSSQKAVDPDLIIRDMAEL
RLGAPVVHLQFGVGRYQGLQYITTNGMSSEFLVLSYSGDDKIYVPVTSLHLISRYTGVDS
EHAPLHKLGSEQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFNQAEYIKFASGF
PFTETSDQLNAIDQIINDMQSSRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCVLVP
TTLLAGQHFESFRDRFADFPINIELLSRFRSSKESQGVLAGLSSGQVDIVIGTHKLFQSN
IAFKNLGLLIIDEEHRFGVKQKEHMKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLIA
TPPAKRLAIKTFWQEKKDIVVREALLREILRGGQVFFLHNNVQTIDRVCQDLQSLVPEAK
IRSAHGQMRERELERVMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPDEKLLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGE
LLGEDQSGNMHAIGFNLFMEMLDRAVDDLKAGRTPELSTPMHQGPEIDLRISAIIPEDYI
GDIHNRLIMYKRISNAKTTQQLHDLQIELIDRFGLLPQPVKHLLLITELKLKADKLGIQK
ISAALEKGKLDFNEKPSINPGVLINLIQVHAKRYQMEGPQRLRFSLDSTTPEERIFEISS
LLTRLAS
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggtgacaaatacgctactctttcaaaccactaagtccaaacaaatatggggacaattg
tatggtagcagcctggcgcttgccttagccgaatattgccagcaaacacccggtgtgaaa
ctgcttattgctcgggataatctcagcgcaagtcaactccaggatgaattacaatttttc
ctcaatgagcaaaatactcatcaggaattattatttttccccgactgggaaaccttgcct
tatgatcagttctcgccacaccaggatattatttcggaacgacttcatacgctaagccgt
gtgcagcaagtcaccaatgcgataataattacctcagcaagcaccttaatgcataaactt
tgtccccctgaatttttaaatcaatatgcattgatgcttagagagggtcaaaaattagag
ttaaattcctttagaactcagctgcaacaatccggatatcattgtgtcaataaagttctg
gaacatggcgaatttgccctacgcggatcgattattgatgtttaccccatggggagtggc
ttgccctttcgtatcgaactgtttgatgatgaaatcgaaagcctgagagaatttgatacc
gaaacacagcgcactatagaaaaaatatcggaaattaacgttttgccagctcgagagttc
cctttgaatgagcaaagtcagactctttttagaaaagcatttagagagctctttccagga
aacccgagccaatgccctatttatgaagccattaccaacggtcaatttccttcgggcata
gaatattttcttcctcttttttttgaaaaaacggtcactttttttgattatttaccccaa
aatgctaaaatttgtctcatagaagatattcaggaaaatgcagagcagttctggcaggag
ttaaccgaacgatatgagcaaaggcgttatgacatcactcggcctatactcgcaccagct
gcatgttttattaatccaaccgaattattaacacaagccaacacctacgaacaattgcga
ttgtttcataaaccttccgaaagaaaaggggctctcaattttgatattgccatagcaccg
caattacctatagatagaaaaacacctgagccattgagtcttttacgagagtattgcgct
aatactgctcgtcgatatttaattattgttgaaagtgctggccgccgtgaagtcttactg
gatttattaaaactgagtggacttgctcctaaagtacaaccttgctggcaagattttatc
aatgataatgtaccgctcaatataacaactggaccactaatttatggttgtgagttgagc
aataaaaatattgttttaattgttgaatcacaattatttggcgaacagagcactcctcaa
cgtcgcagttctcagaaggctgttgatccggaccttattattcgtgatatggccgagtta
cgattaggggcgccagtagttcaccttcagtttggtgttggacgctatcaaggtctgcaa
tacatcaccactaatggtatgtccagtgagtttttagtactgtcctattcaggcgatgat
aaaatatacgtaccagtcacctcacttcatttaatcagccgctacactggagttgacagt
gaacacgcccccttgcacaagctcggctctgaacaatggcaaaaagagaagaaaaaagca
gctgaaaaaatccatgatgttgctattgaattactggatctttatgccaaaagagaagcg
caaccagggcatcaatatgatttcaatcaagctgaatacataaagtttgccagtggtttc
ccttttacagaaaccagcgatcagttgaatgcaatagaccaaatcattaatgacatgcaa
tcctcgaggcctatggatcgattaatttgtggtgatgtaggttttggaaaaacagaagtc
gcaatgcgcgctgcgtttgtggcggttcagaatggaaaacaagtgtgtgtgctggttcct
acaacgctattggccggacaacattttgaatcattccgagatcgtttcgccgacttccca
ataaatatagaattattatctcgttttcgcagtagtaaggaatcccaaggagtcctggca
ggcttgtcctccggtcaggtagatatagtaattggtactcataaattatttcaaagtaat
atcgcttttaaaaatctgggattattaattattgatgaagaacatcgttttggagtaaaa
caaaaagaacacatgaaatctctaagaacccatgttgatattttatccatgacggccacc
cccatccccagaactttgaatatggcaatggcaggaattagagatatctcattaattgcc
accccccctgccaagcgattagccatcaaaactttttggcaggaaaaaaaggatattgta
gttagagaggcattactgcgtgaaattttaagaggtggacaggtgtttttcctccataat
aatgtccaaacaattgatagagtgtgtcaggatctgcaatcccttgttcctgaagcgaaa
attcgtagtgcacatggacaaatgcgcgagcgagaattggagcgagtgatgtctgacttt
tatcatcaccgttttaatgtgttggtctgcacgaccattattgagaccggaatcgatatc
cctaccgccaatacaattattattgatcgagctgataaatttggcttagcccagcttcat
cagctacgaggtcgggtcgggcgttcacatcatcaggcttatgcttatttactaactcct
gatgagaaactattaacccccgatgccgtcaagcgcctggaagctatagtctcactggag
gatttaggcgctgggtttaccttggcaactcatgatctggaaattcgtggtgctggcgaa
ttgttaggtgaagatcaaagtggcaatatgcacgctattggttttaatttatttatggag
atgctcgatagagccgtagatgatttaaaagcaggaagaacacctgaattatcaacgccc
atgcatcagggacctgaaatagacttgcgtatcagtgcgattatcccggaagattatata
ggtgacattcataatcgcttgatcatgtataagagaatttccaatgctaaaaccacacaa
caattacatgatttacaaattgaattaattgatcgctttggattgttacctcagcctgta
aaacatttgttgctcattactgaattaaaattaaaagcagataaattaggtattcaaaaa
attagtgcagccctggaaaagggcaaattagattttaatgaaaaaccctcgattaaccct
ggagtattaattaatctaattcaggttcatgctaaacgttatcagatggaaggaccgcaa
cgcttacgctttagtttagatagcactacccctgaagagcgtatatttgagataagctcc
ttgctcacaaggttagcctcttga
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