Lentibacillus amyloliquefaciens: AOX59_15425
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Entry
AOX59_15425 CDS
T04204
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lao
Lentibacillus amyloliquefaciens
Pathway
lao03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AOX59_15425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lao03400
]
AOX59_15425
Enzymes [BR:
lao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AOX59_15425
DNA repair and recombination proteins [BR:
lao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AOX59_15425
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ALX49837
UniProt:
A0A0U4FH55
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Position
complement(3063751..3065559)
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AA seq
602 aa
AA seq
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MQVMKPIASNALPEGDEWVYEVKYDGFRCVLHWGSDPNSVQIISRNGKDLSGNFPEIINA
CQEQKSHVTDYLPLKLDGELVVLNNTQQANFSLIQKRGRLKKHDLIEQEASRRPASFMAF
DLIAINDTDMIDLTFDERKRTLADVFVGKRSLGDRLHHISSSDNAEALWQDIFAHKGEGM
IAKRKDSRYQPGKKHHDWFKVKNWRTIKAFLTFYEPNNDYFTVCVFQDNSVIEIGKCKHG
LDDEAYKVLKELFLSKGTDEKGGFRIPPAICAEIHTLDLMGGELREPEFNRLLPQATVDD
CTWETLQLDIAMLPETVDVSNTDKLFWPSPGFTKGDLLLYMREIAPYMLPFLKNRLLTII
RSPDGVHGESFFQKHLPDYAPDFIKGVEHDGENCFVCHDLDSLIWFANHGALEYHIPFQT
FEDENPLEIVFDLDPPGREQFSLAVKAALLLKQILDDLRLKSFVKTSGGKGLQVHIPLPA
NSMSYEETGILTQAVAWTLEKSHPDLFTTERFKKKRGDRLYIDYLQHGEGKTIVSPYSPR
KRDDATVAAPLFWDEVNSDLSPDMFRIDNVVERVKAVGCPFKDYFVAGENQVLDDVLAMI
GS
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagttatgaagccaattgcaagtaatgcactccctgaaggcgacgaatgggtttat
gaagttaagtatgatggtttccgctgtgtgctgcattgggggtctgaccctaattcagta
cagataatcagccgaaacggtaaggatttaagcggtaattttccggaaatcattaacgcg
tgccaagaacagaagtcccatgtcacagactatttgccgcttaaactggacggggaattg
gttgttctgaataacacgcagcaggcaaatttttcattgattcaaaagcgcggccgatta
aaaaaacacgacctgatcgaacaggaagcatcccgccgccctgcaagttttatggcattt
gatttgattgcgattaacgacactgacatgattgatctaacatttgacgaacggaaaaga
acccttgctgatgtctttgttggtaagcgttcgttgggagaccgtcttcatcacatcagt
tcttcggacaatgccgaggcgttatggcaggacattttcgcacataaaggtgagggcatg
attgccaaacgtaaagacagccggtatcagccgggcaaaaaacatcatgattggtttaag
gtgaaaaactggcggacgattaaagccttcctgaccttttacgagccgaacaatgattat
tttacggtttgtgttttccaggataattcggtaattgaaatcggtaaatgcaagcatgga
ctggacgacgaagcttataaggtgctaaaggaattatttttgtcaaaaggcacagacgaa
aagggtggttttcgcattccaccagcgatttgtgcagaaattcatacactcgatctgatg
ggcggagagttgcgcgaacctgaattcaatcggctgcttccgcaagcgactgttgatgat
tgcacctgggaaactttgcagctggatattgccatgctgcctgagactgtcgatgtatcc
aataccgataaattattttggccgtcaccgggcttcaccaaaggggatttgcttctttac
atgcgggagatcgcaccatacatgctgccctttctgaaaaatcgattgctgacgattatt
cgcagtccggatggtgtccacggcgaatcctttttccagaaacatctgccggattacgcg
ccggatttcatcaaaggtgttgaacatgatggcgagaattgctttgtctgtcatgatctt
gattcactcatttggtttgccaatcacggggcgttggaataccatatcccgtttcagacg
tttgaggacgaaaacccgcttgagattgtctttgatctcgatcctcccgggagagagcaa
ttttcgcttgccgtaaaagccgctttgttgctgaaacaaatattggacgatctccggctc
aagtcatttgtcaaaacctcgggcgggaaaggtctgcaggtacatattccgcttcctgca
aacagcatgagctatgaggagactgggatattgacacaagcggtcgcctggacacttgaa
aagagccatccggatttgtttacgacagagcggtttaaaaagaagcgcggtgaccggctg
tatattgattatttgcagcacggagaaggcaaaacaattgtctcgccatactccccgagg
aaacgggatgacgccacggttgccgctccactgttctgggatgaggttaatagtgatctg
tcgcccgatatgttcaggattgataatgtggtggagcgtgttaaagcagtcggctgtccg
tttaaagactattttgttgcaggtgaaaatcaagtgcttgatgatgtgctggcgatgatt
ggaagttga
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