Lysobacter antibioticus ATCC 29479: GLA29479_1890
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Entry
GLA29479_1890 CDS
T04526
Symbol
ligD
Name
(GenBank) DNA ligase D, 3'-phosphoesterase domain
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
laq
Lysobacter antibioticus ATCC 29479
Pathway
laq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
laq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GLA29479_1890 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laq03400
]
GLA29479_1890 (ligD)
Enzymes [BR:
laq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GLA29479_1890 (ligD)
DNA repair and recombination proteins [BR:
laq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GLA29479_1890 (ligD)
BRITE hierarchy
SSDB
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Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ALN62763
LinkDB
All DBs
Position
2063622..2065277
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AA seq
551 aa
AA seq
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MTLRDYVRKRRFDATPEPDADRGRAGRGRRKAPIFVVQLHHARARHYDFRLEADGVLKSW
AVPKGPSLRAGERRLAVEVEDHPLSYADFEGDIPEGQYGAGHVDIFDHGTWRTDDDALDQ
IAAGKLDFELDGERLHGRFTLVRTRPVGKQQQWLLIKRSDEHARDSDADRMLDEPAAIAQ
PAAPLPKQVAGKSRAASAKARGAGSRGSGVRSSGVWRNVAAKIAGAVAAPMPKDVELQLA
TLRERPPSGSEWQFEVKWDGYRMLAYVQRGVRLQSRNKVDWSERFAHLAEAIAGLSVRSA
ILDGELIASDRSGRSDFGELQRLLESGQLDSLRYVIFDLLYLDGIDLRGAAQEQRRGLLR
EVLAASTSDALAFSEHVEGDAGQVLAASVKAGLEGIICKRADAPYHGGRSQAWIKLKHVA
DEEFIVVGHTPPKRGRQGFGSLLLARPGADGLAYVGRVGSGFSDAALRSLSKRLQALHSE
QAAVELPGHVPFPRRSVRWVAPELVVDVHSRGRGKEGLIRQASFVRLREDKRAADLSAAV
AAAQXXTHLIN
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
gtgactctgcgcgattacgtgcgcaaacgccgcttcgacgccacgccggagccggatgcc
gaccgcggccgcgcaggtcgagggcggcgcaaggcgccgatcttcgtcgtccagttgcac
catgcgcgggcccgccactacgacttccgcctggaagccgatggcgtgctgaagagctgg
gcggtgccgaaggggccgtcgttgcgtgccggcgagcgccgtctcgcggtcgaggtcgaa
gaccacccgctgtcctatgcggatttcgagggagacattcccgaaggccagtacggtgcc
ggccatgtcgacatcttcgatcatggcacctggcgcaccgacgacgacgcactcgaccag
atcgccgccggcaagctcgatttcgaactcgacggcgagcgcctgcacggccgtttcacc
ctggtgcggacccggcccgtcggcaaacagcagcagtggctgctgatcaagcgcagcgac
gagcatgcgcgcgacagcgacgccgaccgcatgctcgacgagcccgccgcgatcgcccaa
cccgcggcgccgctgccgaaacaggtcgccggaaagtcgcgagcggcgagcgccaaggca
cgcggggctgggtcacgcgggtccggggtgcgtagttccggagtctggcgcaacgtcgcg
gcgaagatcgccggtgccgtcgcggcgccgatgccgaaagacgtcgaattgcagctggct
accttgcgcgagcgcccgccgagcggcagcgagtggcagttcgaagtcaagtgggacggc
tatcgcatgctcgcctacgtccagcgtggcgtacgcctgcaatcgcgcaacaaggtcgat
tggagcgagcgcttcgcgcacctggccgaggccatcgctggcctgtcggtgcgcagcgcg
atcctcgacggcgagttgatcgcctccgaccgcagcggccgcagcgatttcggcgagttg
cagcgcttgctcgaatccgggcagttggattcgctgcgctatgtgatcttcgacctgctg
tatctggacggcatcgacctgcgcggcgcggcgcaggagcagcgccgaggcttgctgcgc
gaggtgttggcggcctcgacctcggacgcgctggccttcagcgaacatgtcgaaggcgat
gccgggcaggtgctggcggcgagcgttaaggccggcctggaaggcatcatctgcaagcgc
gccgatgcgccttaccacggtggccgcagccaggcctggatcaagctcaagcacgtcgcc
gacgaggaattcatcgtcgtcgggcatacgccgccgaagcgcggccgccaggggttcggc
tccctgctgttggcccggcccggcgccgacggtctggcgtatgtcggccgtgtcggcagc
ggtttcagcgatgcggcgctgcgcagcctgagcaagcgcctgcaggcgctgcacagcgaa
caggcagcggtggaactgcccgggcacgtgccgtttccgcgacgttcggtgcgctgggtc
gcgccggaactggtcgtcgacgtgcattcgcgtggacgcggcaaggaaggcctgatccgc
caggccagcttcgtgcggctgcgcgaggacaaacgggccgccgacctgagcgccgccgtc
gcggccgcgcagnnnnncacacacttaattaattaa
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