Lysobacter antibioticus ATCC 29479: GLA29479_3875
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Entry
GLA29479_3875 CDS
T04526
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
laq
Lysobacter antibioticus ATCC 29479
Pathway
laq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
laq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GLA29479_3875 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laq03400
]
GLA29479_3875 (mfd)
Enzymes [BR:
laq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GLA29479_3875 (mfd)
DNA repair and recombination proteins [BR:
laq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GLA29479_3875 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SecA_DEAD
RecG_dom3_C
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ALN64726
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All DBs
Position
4218046..4221507
Genome browser
AA seq
1153 aa
AA seq
DB search
MSLLPKIGQQRAWWRAPASPSALAWAIARAAAEHDGPLLAIARDNHGAHQLESDLRTLLG
RDGASDGAMPVLPFPDWETLPYDLFSPHPDIVSQRLAALHRLPTLKRGIVVVPVQTLLQR
LAPLRHVVGGSFDVAVGQRLDLDAEKRRLESAGYRHVPQVLDPGDFAVRGGLLDVYPMGA
DSPFRVELLDDEIETIRAFDPESQRSLDKIDAVRLLPGREVPLDDASLKRALDALRERFD
LDTRRSALYQDLKSGIAPSGIEYYLPLFFEQTATLFDYLDERMLPVIADGALDAADAFWA
QTGERYEQRRHDLERPLLPPDTLYLTPVGLREKLNEGARIELCGEQHPQRAKALALGDQP
APTLPVAARDAAPAEALKSFLSSYPGRVLIASDTAGRREALLEVLQAAGLKPDVVADWNA
FANGASPSRFAIAVAPFDDGFAVVEPPLAILTERQLFPERAAQPRRRKRVGREPEAIIRD
LGELSEGAPIVHEDHGVGRYRGLIVLEAGGQPGEYLEIEYAKGDRLYVPVAQLHLISRYS
GASVETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQAKRQARAGLALDVDRSMYEPF
AAGFPFEETPDQHSAIEAVIRDLSSSQPMDRVVCGDVGFGKTEVAVRAAFVAATAGKQVA
VLVPTTLLAEQHYRTMRDRFADWPLKVEVLSRFKSTKEIKAELEKVSEGKIDVVVGTHRL
LQPDVRFKDLGVVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRDL
SIIATPPAHRLAVQTFVVPWDDMQLREAFQRELARGGQVYFLHNDVESIGRMKRQLEELV
PEARIGVAHGQMAERELESVMLDFHKQRFNVLLCTTIIESGIDIPNANTIIMNRADKFGL
AQLHQLRGRVGRSHHRAYAYLVIPDKRSITPDAQKRLEAIASMDELGAGFTLATHDLEIR
GAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDVDSTDARGAEVELHIPALIP
DDYLPDVHTRLTLYKRVSGARGDEELRELQVEMIDRFGLLPDAAKHLFAVAELKLIATEL
GIRKLDLGEKGGRVQFVERPNVDPMSIIKLIQGQPKLYQMDGPDKLKLKLDLPDAPARLA
AAKGLLMLLDKKH
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
gtgtccctgctgcccaagatcggccagcagcgcgcctggtggcgtgcgccggcctcgcct
tccgccctggcctgggcgatcgcccgcgccgccgccgaacacgacggccccctgcttgcg
atcgcacgcgacaaccacggcgcgcaccagctcgaatccgatctgcgcaccctgctcggc
cgcgacggcgccagcgacggcgctatgccggtgctgccgttcccggactgggaaaccctg
ccctacgatctgttcagcccgcacccggacatcgtctcgcaacgtctggcggccttgcat
cgcctgccgacgctcaagcgcggcatcgtcgtggtgccggtgcagaccttgctgcagcgc
ctcgcgccgctgcgccacgtggtcggcggcagcttcgacgtcgcggtcggccaacgcctc
gacctggacgcggaaaaacgccggctcgaatcggccggctaccggcacgtgccgcaagtg
ctggacccgggcgacttcgccgtgcgcggcggcctgctcgacgtctatccgatgggcgcc
gactcgccgttccgggtcgagttgctcgacgacgagatcgagaccatccgcgccttcgat
cccgagtcgcagcgctcgctcgacaagatcgatgcggtgcggctgttgccgggccgcgaa
gtgccgctcgacgatgcttcgctcaagcgcgcgctcgacgcgctgcgcgagcgtttcgac
ctcgacacccggcgcagcgcgctctatcaggacttgaagtcgggcatcgcgccgtcgggc
atcgagtactacctgccgctgttcttcgagcagaccgcgactctgttcgactacctcgac
gaacgcatgctgccggtgatcgccgacggcgcgctcgacgccgccgacgcgttctgggcc
cagaccggcgagcgctacgagcagcgccggcacgatctcgaacgcccgctgctgccgccc
gacacgctgtacctgaccccggtcggcctgcgcgaaaagctcaacgaaggcgcgcgcatc
gagttgtgcggcgaacagcatccgcaacgcgccaaggcgctcgcgctcggcgaccagccg
gcgccgaccctgccggtcgcggcgcgcgacgccgccccggccgaagcgctgaagtcgttc
ctgagcagttatcccggacgcgtgctgatcgcctccgacaccgccggccgccgcgaggcc
ttgctcgaagtgttgcaggccgcaggcctgaagccggacgtggtcgccgactggaacgcg
ttcgcgaacggcgcctcgccgagccgcttcgccatcgcggtggcgccgttcgacgatggc
ttcgccgtggtcgagccgccgctggcgatcctgaccgaacgccagctgtttcccgaacgc
gccgcgcagccgcgccggcgcaagcgggtcggccgcgaacccgaagcgatcatccgcgac
ctcggcgagttgtccgaaggcgcgccgatcgtgcacgaggatcacggcgtcggccgttac
cgcggcctgatcgtgctcgaggccggcggccagccgggcgaatacctcgaaatcgaatac
gccaagggcgaccggttgtacgtgccggtcgcgcagttgcatctgatcagccgctattcc
ggtgcttcagtcgaaaccgcgccgctgcactcgctcggcggcgagcaatggaccaaggcc
aagcgcaaggccgccgagaaagtccgcgacgtcgccgccgaactgctggaaatccaggcc
aagcgccaggcccgcgccggcctcgcgctggatgtcgaccgctcgatgtacgagccgttc
gcggccgggttcccgttcgaggaaacccccgaccagcactcggccatcgaggcggtgatc
cgcgacctcagcagcagccagccgatggaccgcgtggtctgcggcgacgtcggcttcggc
aagaccgaagtcgcggtgcgcgcggccttcgtcgccgcgaccgccggcaagcaggtcgcg
gtgctggtgccgaccaccctgctcgccgagcagcactaccgcaccatgcgcgaccgcttc
gccgactggccgttgaaggtcgaagtgctgtcgcgtttcaagagcaccaaggaaatcaag
gccgagttggaaaaggtcagcgagggcaagatcgacgtcgtggtcggcacccatcgcctg
ctgcagccggacgtgcgcttcaaggacctcggcgtggtcatcgtcgacgaagagcagcgt
ttcggcgtgcgccagaaggaggcgctgaaggcgctgcgcgccaacgtgcatctgctgacc
ctgactgccacgccgatcccgcgcaccctcaacatggccatggccgggctgcgcgatctg
agcatcatcgcgaccccgccggcgcatcgcctggcggtgcagaccttcgtcgtgccctgg
gacgacatgcagctgcgcgaggccttccagcgcgagctcgcgcgcggcggccaggtgtat
ttcctgcacaacgacgtcgagagcatcggccgcatgaagcgccagctcgaagagctggtg
ccggaggcgcgcatcggcgtcgcccacggccagatggccgaacgcgaactcgaaagcgtg
atgctcgacttccacaagcagcgcttcaacgtcctgctgtgcacgaccatcatcgaatcg
ggcatcgacatcccgaacgccaacaccatcatcatgaaccgcgccgacaagttcggcctg
gcgcagttgcaccagttgcgcggccgggtcggccgttcgcaccaccgcgcctacgcctat
ctggtgattccggacaagcgctcgatcacgcccgatgcgcaaaagcgcctggaagcgatc
gcctcgatggacgaactcggcgccggcttcaccctggccacccacgacctggaaatccgc
ggcgccggcgagttgctcggcgaggaccagagcgggcagatggccgaggtcggcttcagc
ctgtacaccgagctgctagaacgcgcggtgcgctcgatccgccagggcaagctgcccgac
gtcgactcgaccgacgcgcgcggcgccgaagtcgagctgcacatccccgcgctgatcccg
gacgactacctgcccgacgtgcacacccgcctgaccctgtacaagcgcgtcagcggcgcg
cgcggcgacgaggaactgcgcgagttgcaggtcgagatgatcgaccgcttcggcctgctg
ccggatgcggccaagcatctgttcgcggtcgccgaactcaagctgatcgccaccgagctc
ggcatccgcaaactcgacctcggcgaaaagggcggccgggtgcagttcgtcgagcgcccg
aacgtcgacccgatgtcgatcatcaagctgatccagggccagccgaagctgtaccagatg
gacggccccgacaaactcaaactcaagctggacctgccggacgcgccggcgcgcctggcg
gcggcgaagggcttgctgatgctgctcgacaagaagcactga
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