Lysobacter arenosi: HIV01_001580
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Entry
HIV01_001580 CDS
T07237
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lare
Lysobacter arenosi
Pathway
lare03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lare00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HIV01_001580 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lare03400
]
HIV01_001580 (mfd)
Enzymes [BR:
lare01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HIV01_001580 (mfd)
DNA repair and recombination proteins [BR:
lare03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HIV01_001580 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
SecA_DEAD
LcrG
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QSX75290
LinkDB
All DBs
Position
complement(305107..308568)
Genome browser
AA seq
1153 aa
AA seq
DB search
MPKSDFPTPPLPKAGQQRAWWRAPASPSALAFHIASAARAHAGPVLAVARDNQTAHQLES
DLQTLLAGQTEVPVLAFPDWETLPYDIFSPHPDIVSQRLSALHRLPTLKRGIVVVPVQTL
LQRLAPLKHIVGGSFDVKLGQRLDLDAEKRRLESAGYRHVPQVLDPGDFAVRGGLLDVYP
MGAEQPFRVELLDDEIDTIRAFDPESQRSLDKIDSVHLLPGREVPLDDASLKRALDALRD
RFDLDTRRSALYQDLKAGLTPPGIEYYLPLFFDKTATLFDYLGDDMLPVIGDGAFEAAEQ
FWTNTGERYEQRRHDLERPLLPPDTLYLAPNALRERLNEGNRVEVCGEGHPQRDRAQALG
DQPAPALPIAARDHAPADALKSFLGSYPGRVLIAADSAGRREALLELLQAADLRPDVVTG
WPAFAPAQSRFAIAVAPFDDGFAISEPAIAVLTERQLFPERASQPRRRRRVGREPEAIIR
DLGELSEGAPIVHEDHGVGRYRGLITLEAGGLPGEYLEIEYAKGDRLYVPVAQLHLINRY
SGASDETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQAKRQARAGLAIDIDRSMYEP
FAAAFPFEETPDQHSAIEAVIRDLGSSQPMDRVICGDVGFGKTEVAVRAAFVAAAAGKQV
AVLVPTTLLAEQHYRTMRDRFADWPLKVEVLSRFKTAKEIKAELEKVAEGKIDVVVGTHR
LLQPDVRFKDLGAVIVDEEQRFGVRQKEALKALRANVHLLTMTATPIPRTLNMAMAGLRD
LSIIATPPAHRLAVQTFVVPWDDAQLREAFQRELSRGGQVYFLHNDVESIGRMQRQLEEL
VPEARIGVAHGQMPERELERVMLDFHKQRFNVLLSTTIIESGIDIPNANTIIMNRADKFG
LAQLHQLRGRVGRSHHRAYAYLVVPDKKSITADARKRLDAIAAMDELGAGFTLATHDLEI
RGAGELLGEEQSGQMAEVGFSLYTELLERAVRSIKRGELPDVDGSHARGADVELHVPALI
PDDYLPDVHTRLTLYKRISGARDADELRELQVEMIDRFGLLPDAAKHLFAIAELKQRATT
LGIRKLDLGEKGGRVQFVEKPNVDPMAIIKLIQGQPKLYRMEGPDKLRMTLELPDAQSRL
LAARGIVTALQPA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagtccgattttcccactccgcccttgcccaaggccggacagcagcgcgcctgg
tggcgcgcgccggcatcgccttccgcgctggccttccacatcgcatcggcggcgcgtgcg
cacgcgggcccggtgctcgcggttgcgcgcgacaaccagaccgctcaccagctcgagtcc
gacctgcaaacgctactggccggacagaccgaagtgccggtgctggcattcccggactgg
gaaaccctgccctacgacatcttcagcccgcatccggacatcgtcagccagcgcctgtcg
gcactgcatcgcctgccgacgctcaagcgcgggatcgtggtggtacccgtccagaccctg
ctgcagcgcctggcaccgctcaagcacatcgtcggcggcagcttcgacgtgaagctgggc
cagcgcctggacttggacgcggagaagcgccggctcgaatcggccggatatcgccacgtg
ccgcaggtgctcgacccgggtgacttcgccgtgcgcggcggcctgctcgatgtctatccg
atgggcgccgaacagccgttccgcgtcgaactgctcgacgacgagatcgacaccatccgc
gccttcgatccggagtcgcagcgttcgctcgacaagatcgactcggtgcacctgctgccg
ggccgcgaagtcccgctcgatgacgcctcgctcaagcgcgcgctcgacgccctgcgcgac
cgcttcgatctcgacacccgtcgcagcgcgctctaccaggatctcaaggccggcctcacg
ccgccgggcatcgagtactacctgccgctgttcttcgacaagaccgcgacgctgttcgac
tacctcggcgacgacatgctgccggtgatcggcgacggcgccttcgaggcagccgagcag
ttctggaccaacacgggcgaacgctacgagcagcggcgccacgatctcgaacgtcccctg
ctgccgccggataccctgtacctggctccgaatgcgctgcgcgagcgcctcaacgaaggc
aaccgcgtcgaagtctgcggcgaaggccatccgcaacgcgatcgcgcgcaggccctgggt
gaccagccggcgccggcattgccgatcgccgcccgcgaccacgcgccggcggatgcgctc
aagtcattcctcggcagctatcccggacgcgtgctgatcgccgccgattcggcaggtcgc
cgcgaggcgctgctggaactgttgcaggcggccgacctccggcccgatgtcgtgacgggc
tggccggcattcgccccggcgcagagccggttcgcgatcgcagtcgcaccgttcgacgac
ggcttcgccatcagcgagccggcgatcgcggtccttaccgagcgccagctgtttcccgag
cgcgcaagccagccgcggcgccgacgccgcgtcggccgcgaacccgaagcgatcatccgc
gacctgggtgaactcagcgaaggcgcgccgatcgtccacgaggatcacggcgtcggtcgc
taccgcggcctgatcacgctggaagccggcggtctgccgggcgagtacctggagatcgaa
tacgccaagggcgaccggctgtatgtgccggtcgcgcaactgcacctgatcaaccgctac
tccggcgcctccgacgaaaccgcgccgctgcattcgctcggtggcgagcagtggaccaag
gccaagcgcaaggcggcggagaaggtccgcgacgtcgctgccgaactgctcgagatccag
gccaagcgccaggcccgcgcagggcttgcgatcgacatcgaccgcagcatgtacgagccg
ttcgccgccgcgttcccgttcgaggagacgcccgaccagcattcggcgatcgaggcggtg
atccgcgacctgggctcgagccagccgatggaccgcgtgatctgcggcgacgtcggcttc
ggcaagaccgaagtcgcggtgcgtgccgccttcgtcgccgccgccgccggcaagcaggtc
gcagtgctggtgccgaccacgctgctggccgagcagcactaccgcaccatgcgcgaccgc
ttcgccgactggccgctcaaggtcgaggtgctgtcgcgcttcaagaccgccaaggagatc
aaggccgaactggagaaggtggccgagggcaagatcgacgtcgtcgtcggcacccaccgt
ctgctgcagccggacgtgcgcttcaaggacctgggcgcggtgatcgtcgacgaggagcag
cgcttcggcgtccgccagaaggaggcgctgaaggcactgcgtgccaacgtccacctgctg
acgatgaccgccacgcccattccgcgcacactcaacatggccatggccggcctgcgtgac
ctgtcgatcatcgccaccccgccggcgcatcgcctggcggtgcagacgttcgtggtgccg
tgggatgacgcgcagctgcgcgaggcgttccagcgcgaactgtcgcgcggcggccaggtg
tacttcctgcacaacgacgtcgagagcatcggccgcatgcagcgccagctggaggaactg
gtgccggaggcgcgcatcggcgtcgcccacggccagatgcccgagcgcgaactggaacgg
gtgatgctcgacttccacaagcagcgcttcaacgtgctgctgtcgacgacgatcatcgaa
tcgggcatcgacatccccaacgccaacaccatcatcatgaaccgcgccgacaagttcggc
ctggcgcagctgcaccagctgcgtggtcgcgtcggtcgttcccaccaccgtgcctatgcc
tacctggtggtgccggacaagaaatcgatcaccgccgatgcgcgcaagcgcctggatgcg
atcgcggcgatggacgagctcggcgccggcttcaccctggccacgcacgacctggaaatc
cgcggcgccggcgaactgctcggcgaggaacagagcggacagatggccgaggtcggtttc
agcctctacaccgagctgctcgaacgcgcggttcgctcgatcaagcgtggcgaactgccc
gatgtcgacggcagccatgcccgcggcgccgacgtcgaactgcacgtgccagcactgata
ccggacgactacctgcctgacgtgcacacgcgcctgacgctgtacaagcgcatcagcggc
gcacgtgacgccgatgagctgcgcgaactgcaggtggagatgatcgaccgcttcggcctg
ctgccggacgcggccaagcacctgttcgccattgccgagctcaagcagcgcgcgaccacg
ctgggcatccgcaagctcgacctgggcgaaaagggcgggcgcgtgcagttcgtcgagaag
ccgaacgtcgatccgatggcgatcatcaagctcatccagggccagccaaagctctaccgg
atggagggaccggacaagctgcgcatgaccctggaactgcccgatgcacagtcgcggctg
ctggcggcgcgcggaatcgtcacggcattgcagccggcctga
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