Lysobacter auxotrophicus: LA521A_25070
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Entry
LA521A_25070 CDS
T09075
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
laux
Lysobacter auxotrophicus
Pathway
laux03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
laux00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LA521A_25070 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laux03400
]
LA521A_25070 (mfd)
Enzymes [BR:
laux01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LA521A_25070 (mfd)
DNA repair and recombination proteins [BR:
laux03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LA521A_25070 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
ERCC3_RAD25_C
DUF150_C
Motif
Other DBs
NCBI-ProteinID:
BDU17306
LinkDB
All DBs
Position
2816291..2819764
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AA seq
1157 aa
AA seq
DB search
MPKSAIPTPPLPKTGQQRAWWRAPASPSALAFHIATAAAAHAAPLLVVARDNHGAHQLES
DLHTLLGARQTDLPVIGFPDWETLPYDVFSPHPDIVSQRLAALHRLPTLKRGIVIVPVQT
LLQRLAPLKHVVGGSFDVKTGQRLDLDAEKRRLESAGYRHVPQVLDPGDFAVRGGLLDVY
PMGADQPFRVELLDDEIETIRAFDPESQRSLEKIDAVHLLPGREVPLSDAALKRALDALR
DRFDLDTRRSALYQDLKAGLAPPGIEYYLPLFFDTTSTLFDYLDADTLPVIADGAMEAAD
QFWTHTGERYEQRRHDLERPLLPPDALYLPPDALRERLNAGARVEVCGEGHAQRERASAL
GDQPAPALPLAARDHATADSLKSFLSSYPGRVLMAADSAGRREALLEILQSGALKPDVVT
DFPTFLAANDASRFAIAVAPLEDGFAITDPAFVVLTERQLFPERASQPRRRRRVGREPEA
IIKDLGELTEGAPIVHEDHGVGRYRGLVTLEAGGMPAEYLEIEYAKGDRLYVPVAQLHLI
NRYSGASEETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQAKRQARAGLAIDVDRSV
YEPFAAAFPFEETPDQHAAIEAVIRDLASSQPMDRVVCGDVGFGKTEVAVRAAFTTAMGG
KQVAVLVPTTLLAEQHYRNFRDRFADWPIKVEVLSRFKTKKEIEAELAKVAEGTIDVIVG
THRLLQKDVRFKDLGAVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAG
LRDLSIIATPPAHRLAVQTFVVPWDDMQLREAFQRELSRGGQVYFLHNDVESIGRMQREL
QELVPEARIGVAHGQMPERELERVMLDFHKQRYNVLLSTTIIESGIDIPNANTIIINRAD
RFGLAQLHQLRGRVGRSHHRAYAYLVVPDRKAMTDDARKRLDAIAAMDELGAGFTLATHD
LEIRGAGELLGEEQSGQMAEVGFSLYTELLERAVRSIRQGKLPDVDMVEARGAEVELRIP
ALIPDDYLPDVHTRLTLYKRISGARDTDELRELQVEMIDRFGLLPDPAKYMFAVAELKLR
ATELGIRKLDLGETGGRVHFVEKPNVDPMAIIRLIQGQPKLYKMEGPDKLRMVLDLPDAA
SRVLAAKGILTALQPAA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagtccgctattccgacgcctcccctgcccaagaccggccagcagcgcgcctgg
tggcgtgcgcccgcatcgccctccgcgctggccttccacatcgccaccgcggcggcggcg
catgccgcgccgctgctggtggtcgcgcgcgacaaccacggggcgcaccagctcgaatcc
gacctgcacacgctactgggcgcgcggcagacggacctgccggtgatcggcttcccggac
tgggaaaccctgccctacgacgtcttcagcccgcatccggacatcgtcagccagcgcctg
gccgccctgcaccgcctgccaacgctcaagcgcggcatcgtcatcgtgccggtgcagacg
ctgctgcagcgtctggcgccgctcaagcacgtggtcggcggcagcttcgacgtgaagacc
ggccagcgcctggacctcgacgccgaaaagcgccggctcgaatccgccggctaccgccac
gtgccgcaggtgctcgatccgggcgatttcgccgtgcgcggcggcctgctcgatgtgtac
ccgatgggcgccgaccagcccttccgcgtcgaactgctggacgacgagatcgagacgatc
cgcgcgttcgatcccgaatcgcagcgctcgctggagaagatcgacgccgtgcacctgctg
cccggccgcgaagtgccgctgagcgatgcggcgctcaagcgtgcactcgatgcgctgcgc
gaccgcttcgacctggacactcgtcgaagcgcgctgtaccaggatctcaaggccggcctc
gcgcctccgggcatcgagtactacctgccgctgttcttcgacacgacctccacgctgttc
gactacctcgacgccgacacgctgccggtgatcgccgacggcgcgatggaagcggccgac
cagttctggacgcacaccggcgagcgctacgagcagcgtcgccacgacctggaacgtccg
ctgcttccgcccgacgcgctgtaccttccgccggacgcattgcgcgaacggctcaacgcc
ggcgcacgcgtggaagtctgcggcgaaggccatgcgcagcgcgaacgcgccagcgcgctg
ggcgaccagcccgcacccgcgctgccgctcgccgcgcgcgatcatgcgaccgccgattcg
ctgaagtcgttcctgtcgagctatcccggccgcgtgctgatggcggcggattcggcgggc
cggcgcgaagcgctgctcgaaatcctgcagtcgggcgcgctgaagcccgacgtcgtcacc
gatttcccgacgttcctcgccgcgaacgacgcctcgcgtttcgccatcgcggtggcgccg
ctggaggacggcttcgcgatcacggacccggcgttcgtcgtcctcaccgagcggcagctc
ttccccgagcgcgcgagccagccgcgacgtcgccgtcgcgtcggccgcgagcccgaggcg
atcatcaaggacctgggcgaactcaccgagggcgcgccgatcgtccacgaggaccacggc
gtcggccgctatcgcggcctggtgacgctggaagccgggggcatgccggccgaatacctc
gagatcgaatacgccaagggcgaccggctgtacgtgccggtcgcgcagctgcacctgatc
aaccgctattccggcgcgtcggaagaaaccgcgccgctgcattccctcggcggcgagcag
tggacgaaggccaagcgcaaggccgcggaaaaagtgcgcgacgtcgcggccgaactgctg
gaaatccaggccaagcggcaggcccgcgcgggattggcgatcgatgtggaccgttcggtg
tacgagcccttcgcggcggcgttcccgttcgaggaaaccccggaccagcacgcggcgatc
gaagcggtgatccgcgacctggcatcgagccagccgatggaccgcgtcgtctgcggcgac
gtcggcttcggcaagaccgaagtcgcggtgcgcgcggcgttcaccaccgcgatgggcggc
aagcaggtcgcggtgctggtgccgacgacgttgctggccgagcagcattaccgcaatttc
cgcgaccgtttcgccgactggccgatcaaggtcgaggtgctgtcgcgtttcaagaccaag
aaggaaatcgaggccgaactggccaaggtcgccgaaggcaccatcgacgtgatcgtcggc
acgcatcgcctgttgcagaaggatgtgcgcttcaaggacctgggcgcggtcatcgtcgac
gaggagcagcgtttcggcgtgcgccagaaggaagcgctgaaggcgctgcgcgcgaacgtg
cacctgctcacgctcaccgcgacgccgatcccgcgcacgctcaacatggcgatggccggg
ctgcgcgacctgtcgatcatcgccacgcccccggcgcatcgcctcgccgtgcagaccttc
gtcgtgccgtgggacgacatgcagctgcgcgaggcgttccagcgcgagctctcgcgcggc
ggccaggtgtatttcctgcacaacgacgtggaaagcatcggtcgcatgcagcgcgagctg
caggaactggtgcccgaagcgcgcatcggcgtggcgcacggtcagatgcccgagcgcgag
ctggagcgcgtgatgctcgacttccacaagcagcgctacaacgtgctgctgtcgacgacg
atcatcgaatcgggcatcgacatccccaacgccaacaccatcatcatcaaccgcgccgac
cgcttcggcctggcgcagctgcaccagctgcgcggccgcgtgggccgctcgcaccatcgc
gcgtacgcgtacctcgtggtgcccgatcgcaaggcgatgaccgacgatgcgcgcaagcgc
ctggacgcgatcgcggcgatggacgaactcggcgcgggtttcacgctggccacgcacgat
ctggaaatccgcggcgccggcgaactgctcggcgaggaacagagcggccagatggcggag
gtcggtttcagcctgtacaccgaactgctcgaacgcgcggtgcgctcgatccgccagggc
aagctgccggacgtggacatggtcgaagcgcgcggcgcggaagtggaactgcgcatcccg
gcgctgattcccgacgactacctgcccgacgtgcacacgcgcctgacgctgtacaagcgc
atcagcggcgcgcgcgacacggacgagctgcgcgagctgcaggtggaaatgatcgaccgc
ttcggcctgctgccggatccggccaagtacatgttcgccgtggccgaactcaagctgcgc
gcgacggaactgggcatccgcaagctcgacctcggcgaaaccggcggtcgcgtgcatttc
gtcgagaagcccaacgtcgatccgatggcgatcatccgcctcatccagggccagccgaag
ctctacaagatggaagggccggacaagctgcgcatggtgctcgatctgccggatgcggca
tcgcgcgtgcttgccgccaagggcatcctcacggcacttcagccggccgcgtga
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